Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: -
Assembly: GCA_036326145.1
Location: JARFJA010000019.1:4730862-4735481[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 36 0.0047 0.44 11.9 0.9 2 23 51 72 50 72 0.95

2 36 0.00035 0.032 15.5 3.6 1 22 78 99 78 102 0.91

3 36 1.2 1.1e+02 4.3 0.5 2 14 108 120 107 129 0.79

4 36 0.028 2.6 9.5 1.9 3 23 136 157 135 157 0.94

5 36 3.9e-07 3.6e-05 24.7 1.9 1 23 161 183 161 183 0.99

6 36 0.0029 0.27 12.5 0.8 1 23 193 216 193 216 0.96

7 36 0.011 0.99 10.8 4.2 2 23 223 244 222 244 0.93

8 36 5.9e-05 0.0055 17.9 2.4 1 23 250 272 250 272 0.98

9 36 1.7e-07 1.6e-05 25.9 1.0 1 23 278 300 278 300 0.98

10 36 0.00034 0.032 15.5 0.4 1 23 306 329 306 329 0.98

11 36 0.63 59 5.2 3.2 2 23 340 361 339 361 0.96

12 36 0.29 27 6.3 1.9 1 20 367 386 367 388 0.93

13 36 0.0094 0.88 11.0 0.2 2 23 396 417 395 417 0.87

14 36 6.2 5.8e+02 2.1 2.2 3 23 424 445 423 445 0.94

15 36 0.00017 0.016 16.4 0.1 1 23 449 471 449 471 0.98

16 36 5.6e-06 0.00052 21.1 2.8 1 23 481 504 481 504 0.96

17 36 2.5e-05 0.0023 19.1 0.1 2 23 511 532 510 532 0.96

18 36 1.1e-07 1e-05 26.5 1.4 1 23 538 560 538 560 0.99

19 36 7.2e-07 6.7e-05 23.9 2.0 1 23 566 588 566 588 0.98

20 36 0.065 6 8.3 0.0 3 21 684 702 682 703 0.88

21 36 2.6e-05 0.0025 19.0 3.5 2 23 712 733 711 733 0.97

22 36 3.5e-06 0.00033 21.7 0.1 1 23 739 762 739 762 0.94

23 36 0.0017 0.16 13.3 2.8 1 23 773 796 773 796 0.97

24 36 0.00019 0.018 16.3 0.6 1 23 802 824 802 824 0.95

25 36 1.3e-06 0.00012 23.1 1.1 1 23 830 852 830 852 0.98

26 36 0.0022 0.2 13.0 5.5 1 23 858 880 858 880 0.97

27 36 3.7e-06 0.00034 21.7 1.0 1 23 886 908 886 908 0.98

28 36 0.009 0.84 11.0 0.8 2 23 974 995 973 995 0.89

29 36 1.5 1.4e+02 4.0 2.9 1 23 1001 1023 1001 1023 0.97

30 36 0.0044 0.42 12.0 0.2 1 23 1029 1051 1029 1051 0.96

31 36 0.0011 0.1 13.9 2.0 1 23 1057 1080 1057 1080 0.97

32 36 0.0004 0.037 15.3 1.2 1 23 1092 1115 1092 1115 0.96

33 36 8.1e-05 0.0076 17.4 0.5 3 23 1125 1145 1124 1145 0.99

34 36 1.9e-06 0.00018 22.6 1.7 1 23 1151 1173 1151 1173 0.99

35 36 3.2e-06 0.0003 21.9 2.0 1 23 1179 1201 1179 1201 0.99

36 36 0.42 40 5.7 0.4 1 21 1207 1227 1207 1228 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	36	0.0047	0.44	11.9	0.9	2	23	51	72	50	72	0.95
2	36	0.00035	0.032	15.5	3.6	1	22	78	99	78	102	0.91
3	36	1.2	1.1e+02	4.3	0.5	2	14	108	120	107	129	0.79
4	36	0.028	2.6	9.5	1.9	3	23	136	157	135	157	0.94
5	36	3.9e-07	3.6e-05	24.7	1.9	1	23	161	183	161	183	0.99
6	36	0.0029	0.27	12.5	0.8	1	23	193	216	193	216	0.96
7	36	0.011	0.99	10.8	4.2	2	23	223	244	222	244	0.93
8	36	5.9e-05	0.0055	17.9	2.4	1	23	250	272	250	272	0.98
9	36	1.7e-07	1.6e-05	25.9	1.0	1	23	278	300	278	300	0.98
10	36	0.00034	0.032	15.5	0.4	1	23	306	329	306	329	0.98
11	36	0.63	59	5.2	3.2	2	23	340	361	339	361	0.96
12	36	0.29	27	6.3	1.9	1	20	367	386	367	388	0.93
13	36	0.0094	0.88	11.0	0.2	2	23	396	417	395	417	0.87
14	36	6.2	5.8e+02	2.1	2.2	3	23	424	445	423	445	0.94
15	36	0.00017	0.016	16.4	0.1	1	23	449	471	449	471	0.98
16	36	5.6e-06	0.00052	21.1	2.8	1	23	481	504	481	504	0.96
17	36	2.5e-05	0.0023	19.1	0.1	2	23	511	532	510	532	0.96
18	36	1.1e-07	1e-05	26.5	1.4	1	23	538	560	538	560	0.99
19	36	7.2e-07	6.7e-05	23.9	2.0	1	23	566	588	566	588	0.98
20	36	0.065	6	8.3	0.0	3	21	684	702	682	703	0.88
21	36	2.6e-05	0.0025	19.0	3.5	2	23	712	733	711	733	0.97
22	36	3.5e-06	0.00033	21.7	0.1	1	23	739	762	739	762	0.94
23	36	0.0017	0.16	13.3	2.8	1	23	773	796	773	796	0.97
24	36	0.00019	0.018	16.3	0.6	1	23	802	824	802	824	0.95
25	36	1.3e-06	0.00012	23.1	1.1	1	23	830	852	830	852	0.98
26	36	0.0022	0.2	13.0	5.5	1	23	858	880	858	880	0.97
27	36	3.7e-06	0.00034	21.7	1.0	1	23	886	908	886	908	0.98
28	36	0.009	0.84	11.0	0.8	2	23	974	995	973	995	0.89
29	36	1.5	1.4e+02	4.0	2.9	1	23	1001	1023	1001	1023	0.97
30	36	0.0044	0.42	12.0	0.2	1	23	1029	1051	1029	1051	0.96
31	36	0.0011	0.1	13.9	2.0	1	23	1057	1080	1057	1080	0.97
32	36	0.0004	0.037	15.3	1.2	1	23	1092	1115	1092	1115	0.96
33	36	8.1e-05	0.0076	17.4	0.5	3	23	1125	1145	1124	1145	0.99
34	36	1.9e-06	0.00018	22.6	1.7	1	23	1151	1173	1151	1173	0.99
35	36	3.2e-06	0.0003	21.9	2.0	1	23	1179	1201	1179	1201	0.99
36	36	0.42	40	5.7	0.4	1	21	1207	1227	1207	1228	0.91

Sequence Information

Coding Sequence: ATGGATTATTATGCATTTCGCAGAGACGCACGCACGTGTGTGATCGTGGCAGTTGAGTTTCGTTGTCTTAACCGTTTTAGTGCCACGCAGCGCGATTGCGCTGTTCGCGTACTGTGGTTGCTTGTTGAagatttggaaaaaaaagaaatgacCTGTCCCGTGTGTTCGAAAGTGTTCCGATGGAATTCTCGTCTGAAGAAACATTTCATTTCTCACACCGACTATAGACCGTACGAGTGCACTACATGTGGCGCCTCGTTTAAGTCGTTAGAACACCTGCGCGCGCATCACTCCCGAAAATTTCATCGCCTAGCGAAGTGGCAGTGCAACGTCTGccaaaaacttttcaaagacAAATTGCAGCACGATTTGCACGTTTCCGTGCATAGGATTGGTAAATCGTTTTGCGAGGAGTGCAACAAGGAATTTGGGCACGTGCGAAGCTTGGAGCAACACGTGAAATTCAAGCACATGAAACTGTACACTTGCAATATCTGCGGCAAGTGTCTCAATCAGGAGTCAAACTTGCGTGCCCACCTGAAAACGCACGAGCCGAACTACGAAAAACCGAGCGGCTATCAATGCGAAGTTTGTGGTAAAGAATTTCTGCATATCGCCACCTTAAATGCGCACTTGCACTCCGTTCACAAGGGCGAAACGCGCTGTATCTGCGACATATGTGGGAAAAAGCTATGTTCGTCCGCGAGCTTAAAGAACCACAAACTTTTCCATCAGAACTTGAAGCCCTTCACCTGTACGAAATGCGAAAAATCTTTTAGGAAACTGGCGACGCTGAAAATGCATACGATAACCCACACCGGCATAAAACCTTACAGGTGCGACGATTGCGACAAGAGTTTTACTCAAAGTAGTACTTTGGTAATTCACAGGCGCTTGCATACTGGCGAGCGGCCCTACACTTGTGGCGTTTGCCAGGACTCGTTCGTCAGTAAGGCcgctttaaataaacatttaaagagATCGCATAATCTTGTTATGACAGATGACGGTGAGCTAAAATGTTCCTACTGTTTGAACGTGTGTCGTTCGATGCACGGCCTCATCCAACACATGACCTTGCACAAGGAATACAAACCGTACCAGTGTCAAATTTGCTTGACGAAATTCACGAGAATTCGCAGGTTTCGTCAGCACAAGACTCGAAACAACTGTCATTCCTTGTTGAGGTGCAACGTGTGCGATAAAGTCTTTAAAAACCCGTTGCGCTTCGACCTTCACTTGGCCGCGCACCGCGACGGCAAAGCTTTCTGCGAAACGTGCAACATCGAGTTCCTGCACGAACTGAGCTTAGAGCACCATATCAAGGCGAAACACATGAAATTATTCGAGTGCGAGGTCTGCGGCAAAATAATGAGCAACAACATTGAATTGAAGGCGCACGTGAAGACCCACAAGCAGGGTTACGAGATAAAAAGGGAGCACAAGTGCGATCTTTGCGAGAAAGCGTTTTCGCGCAAGAGCAGCTTAACGCATCACGTGAACGTCGCGCACACGGGCGAAAATCATTGGATCTGCGACATATGCGGAAAATCGTTGAGTAAGTCGAAAAATTTGAGCGAGCACATGCTTATTCACGAAGGAGTAAAGCCGTTCAAGTGTTCGGATTGTGGAAAAGGTTTTACCAAACAAACCAACATGAAGGTGCACATGCGCGTACATACGGGCGCAAAGCCGTACAAGTGCGAGGAGTGCGGGAAAAGCTTCACCCAAAGCGGCACGTTGATTATCCATAAACGTCACCATACAGGCGAACGTCCGTATAATTGTACAATTTGCAAGCAAGAATTAAACGTTAAACTACCACTGGGAATTACTGTAAAGCTTGTACAAAACACGACCGCACCAAAACTCGTCGGAACCCAAAGGGACCGAGGCGCCATCCGAACTGACCCATTTTCGACCGAagaaattcttcaaaaattatcaaagCCCGGCGTTCGCGTCGTTAAGATGTCGAATGAACCTCAGAAATCGGCTCGGAAACGACAAAGGTCTGTGTTCACGACGGTGAAAAAGGCCACTTACCTTTGTATCGTGTGCGGGACCAGTTTCCCCACGTTCGACACCCTGTCGGACCACATAAAGGTTTCCTGTCTCGTCAACAAACGCGTCGTTTGCCCCATCTGCGATAAATCTTTCAAGAGCCGGTCGCATTGCAACGCGCATATGACCACTCACGCCCGAAAACCGACCTATCCGTGCGAAAAATGCGGAAAGGAGTTCACCAACCCGACCTCGCTGGAGGCGCACCTGGAGTTGTCTCATACCAAATATTTCGACGCGACGATCGACGCGTTTGCCTGTAAACTATGCGACAAGAAGGTGAAAAATAAACGGCTGATCGAGCGCCACATCAACACGTGCCATCTGCACATGAGCACGTTCCTTTGCGACATATGCGGAAAGGACTTTTTGAACGAGAGCAATTTGCGCAACCACACTTCCACCCATAGCGACTGGAAACCGTACGTCTGCCAGATTTGCTCGAAGTCGTTCAAATTGAAGAGCTCGCTGAGGGCCCACATAACCACGCATAACGAGGAGCGCCGGTTTGTTTGCGACGAATGCGGGAAGGCTTTCAAGAAAAGTTGCACCTTATACGACCACAAGAAGCATCACGCGGGCGAGTATCGTTTTAACTGTGACGTGTGCGAGAAAAAATTCGTTTCGAAGTCCGCCCTGAGCACGCACATGAAAAGTCATACaagTGGCAGCCAAAACAGTTCGTTAATCGGGAAATTGGTGGTTGGTCCTTCGATGTCGGTCACGATGACTAATTCGGTATTCGTGAAGACGCTCGGCGACAAGGACGTCGATATGTTTTACAGCGATGATGATTCGGAGGATCTATTCGAAATAGTGAATTCGACCACCAACAAGGGTAACTACGAAGTCATCTATTGTCACGTTTGCGGAAAAGACTTCAAAAATAACTTGTCGTTCGCTTTACATTCCATCGATCATAACAAGGATAAAAAATACGCCTGTCACATGTGCGAATTCGGCACCTTATCGAAGCACAAGCTTGAGAAACACGTGCAGGTGCACGAGGGAAAAGGACGCTTCCGTTGCGAAATTTGTAATAAAGGGTTCACCGTGTTGGCCAACGCTCTAGAACATAAAAACCTACACACCGGCGATAAACCGTTTCGCTGCGACATCTGCGGAAAAAAGTTCATGTTCACGAGGTTTTTGTCGTCGCATCGCCGCATCGAGCACTACGAAATACTGACGGGCCAGCCGTCACCAGAATATACCTGTACGGTGTGCGACAAGAACCTCTCGTCCGCAACTGGCCTGGCGCGACACCAACAGCACTACCACATCGACGGCTTCGAACAGTCTAGGCTCTGCGACATATGTGGCAAACGGATGGCCAGTAAAGATCAGCTCAAGAACCATCAGCGTGTCCATACCGGTTACAAACCTTTCAAGTGCCTGGTGTGCTCGAAAAGCTTTACCAGGAAGGACTGGCTGAGAGAACACGAACGCACTCACACTGGCGAGAAGCCGTACACGTGTAAATACTGCCAGAAAGGTTTCACGCAACGATCCCCTCTGAAGATACACGAACGAACCCATACCGGCGAACGACCGTACGTTTGTCGTTTCTGCAGCAAAGGGTTCATTTCGAAGGGCATAATGGACACCCACATGAGAAAATGCGACGGAATTTAG
Protein Sequence: MDYYAFRRDARTCVIVAVEFRCLNRFSATQRDCAVRVLWLLVEDLEKKEMTCPVCSKVFRWNSRLKKHFISHTDYRPYECTTCGASFKSLEHLRAHHSRKFHRLAKWQCNVCQKLFKDKLQHDLHVSVHRIGKSFCEECNKEFGHVRSLEQHVKFKHMKLYTCNICGKCLNQESNLRAHLKTHEPNYEKPSGYQCEVCGKEFLHIATLNAHLHSVHKGETRCICDICGKKLCSSASLKNHKLFHQNLKPFTCTKCEKSFRKLATLKMHTITHTGIKPYRCDDCDKSFTQSSTLVIHRRLHTGERPYTCGVCQDSFVSKAALNKHLKRSHNLVMTDDGELKCSYCLNVCRSMHGLIQHMTLHKEYKPYQCQICLTKFTRIRRFRQHKTRNNCHSLLRCNVCDKVFKNPLRFDLHLAAHRDGKAFCETCNIEFLHELSLEHHIKAKHMKLFECEVCGKIMSNNIELKAHVKTHKQGYEIKREHKCDLCEKAFSRKSSLTHHVNVAHTGENHWICDICGKSLSKSKNLSEHMLIHEGVKPFKCSDCGKGFTKQTNMKVHMRVHTGAKPYKCEECGKSFTQSGTLIIHKRHHTGERPYNCTICKQELNVKLPLGITVKLVQNTTAPKLVGTQRDRGAIRTDPFSTEEILQKLSKPGVRVVKMSNEPQKSARKRQRSVFTTVKKATYLCIVCGTSFPTFDTLSDHIKVSCLVNKRVVCPICDKSFKSRSHCNAHMTTHARKPTYPCEKCGKEFTNPTSLEAHLELSHTKYFDATIDAFACKLCDKKVKNKRLIERHINTCHLHMSTFLCDICGKDFLNESNLRNHTSTHSDWKPYVCQICSKSFKLKSSLRAHITTHNEERRFVCDECGKAFKKSCTLYDHKKHHAGEYRFNCDVCEKKFVSKSALSTHMKSHTSGSQNSSLIGKLVVGPSMSVTMTNSVFVKTLGDKDVDMFYSDDDSEDLFEIVNSTTNKGNYEVIYCHVCGKDFKNNLSFALHSIDHNKDKKYACHMCEFGTLSKHKLEKHVQVHEGKGRFRCEICNKGFTVLANALEHKNLHTGDKPFRCDICGKKFMFTRFLSSHRRIEHYEILTGQPSPEYTCTVCDKNLSSATGLARHQQHYHIDGFEQSRLCDICGKRMASKDQLKNHQRVHTGYKPFKCLVCSKSFTRKDWLREHERTHTGEKPYTCKYCQKGFTQRSPLKIHERTHTGERPYVCRFCSKGFISKGIMDTHMRKCDGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -