Rgig009333.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000019.1:4658342-4668275[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 50 0.0011 0.11 13.8 0.6 2 23 19 40 18 40 0.97
2 50 0.0025 0.23 12.8 0.2 3 23 47 70 45 70 0.93
3 50 0.0015 0.14 13.4 1.7 1 23 76 98 76 98 0.96
4 50 0.021 2 9.8 1.1 1 23 104 127 104 127 0.95
5 50 0.0056 0.52 11.7 8.5 1 23 132 154 132 154 0.97
6 50 0.00018 0.017 16.3 1.0 2 23 164 185 164 185 0.98
7 50 0.00087 0.081 14.2 1.5 3 23 193 213 191 213 0.96
8 50 0.0023 0.21 12.9 4.2 1 23 219 242 219 242 0.97
9 50 0.0012 0.12 13.7 9.2 1 23 247 269 247 269 0.97
10 50 0.0019 0.17 13.2 1.1 2 23 279 300 279 300 0.98
11 50 0.0028 0.26 12.6 0.7 1 23 306 328 306 328 0.97
12 50 5.7e-06 0.00053 21.1 0.2 1 23 334 356 334 356 0.98
13 50 0.0011 0.099 13.9 2.0 2 23 389 410 388 410 0.96
14 50 0.002 0.18 13.1 0.2 3 23 417 440 415 440 0.93
15 50 0.032 3 9.3 2.2 1 23 446 468 446 468 0.97
16 50 0.0006 0.056 14.7 2.4 1 23 474 497 474 497 0.97
17 50 0.0022 0.21 12.9 7.6 1 23 502 524 502 524 0.97
18 50 0.0021 0.2 13.0 0.7 2 23 534 555 534 555 0.98
19 50 2.7e-06 0.00025 22.1 1.9 1 23 561 583 561 583 0.98
20 50 1.4e-05 0.0013 19.9 2.5 1 23 589 611 589 611 0.98
21 50 0.00011 0.01 17.0 1.5 1 21 617 637 617 638 0.97
22 50 0.06 5.6 8.4 3.8 1 23 657 679 657 679 0.97
23 50 0.0082 0.77 11.1 0.8 2 23 690 711 690 711 0.98
24 50 0.03 2.8 9.4 0.8 2 23 737 758 736 758 0.97
25 50 0.0047 0.44 11.9 1.2 3 23 765 786 763 786 0.92
26 50 0.0013 0.12 13.7 2.3 2 23 796 817 795 817 0.96
27 50 0.00012 0.011 16.9 2.4 1 23 823 846 823 846 0.95
28 50 0.0012 0.11 13.8 5.6 1 23 851 873 851 873 0.98
29 50 0.0053 0.49 11.7 0.4 1 23 881 903 881 903 0.98
30 50 0.0014 0.13 13.6 1.8 1 23 909 931 909 931 0.96
31 50 5.5e-06 0.00051 21.1 0.8 1 23 937 959 937 959 0.98
32 50 1.8e-05 0.0017 19.5 4.2 1 23 965 987 965 987 0.98
33 50 8.3e-05 0.0077 17.4 0.8 1 23 993 1015 993 1015 0.98
34 50 0.006 0.56 11.6 5.5 1 23 1032 1054 1032 1054 0.98
35 50 0.005 0.47 11.8 1.2 1 20 1060 1079 1060 1082 0.93
36 50 6.3e-05 0.0059 17.8 2.1 1 23 1111 1133 1111 1133 0.98
37 50 2.7e-05 0.0025 19.0 1.2 1 23 1139 1161 1139 1161 0.98
38 50 3.3e-06 0.00031 21.8 1.6 1 23 1168 1190 1168 1190 0.99
39 50 0.2 18 6.8 0.8 3 23 1198 1219 1196 1219 0.89
40 50 0.00053 0.049 14.9 3.2 1 23 1224 1246 1224 1246 0.98
41 50 0.042 3.9 8.9 2.5 1 23 1256 1278 1256 1278 0.98
42 50 0.0003 0.028 15.7 0.4 1 23 1284 1306 1284 1306 0.98
43 50 0.00031 0.029 15.6 0.3 1 23 1312 1334 1312 1334 0.99
44 50 8.9e-06 0.00083 20.5 1.2 1 23 1340 1362 1340 1362 0.98
45 50 0.012 1.2 10.6 0.2 1 23 1368 1391 1368 1391 0.95
46 50 1.8 1.7e+02 3.8 1.2 1 21 1416 1436 1416 1437 0.92
47 50 1.4 1.3e+02 4.1 0.2 2 19 1575 1592 1574 1595 0.92
48 50 0.19 18 6.9 1.3 3 23 1603 1624 1602 1624 0.92
49 50 0.13 12 7.4 5.7 1 23 1656 1679 1656 1679 0.95
50 50 7.5e-05 0.007 17.6 2.0 1 23 1684 1706 1684 1706 0.96

Sequence Information

Coding Sequence
ATGTACAAAATAGTGACGAATCGCGTTATCGAAGGCAGCCAATTATCAAAAAAGGAGTGTCAGCTGTGCAATAAAGTATTTGATAGCGCTTTACAATTGAGTAGCCATAAACGTATTCACAAGGTTAAAGGAATTCCGTGCGACGCCGAAGGGTGCGATAAAAAGTTCAAAATCTTAAGCGAGCTGCGAACTCACAAGAAGCGCGTTCACTTTAAAGGTGACAAACACGCATGCGATTTGTGCGGTAAAGCTTTCGCATCGGAAGACTCGTTAAAATGTCACCAGAAAATTCACTATAAGGAATATACGCATAAGTGCGACAAGTGCGGCAAAGGTTATTTCGGTGGTCAAAGTTTGGAGCGCCATTATGAAGTTCAGCATGAAGGCGTTCGCTTTCACTGCGAACATTGCAAGAAGACGTTTATGAACAAAGATTTCTTCAAAAAGCACCTGCTATCCCACAAGACCGGCTTCGTCAAAGAGCAGCGTAAGTGCGACTTGTGCGACAAAGTGTTGCGGTACCCTCAAAGCTACTTCAAGCACATGAGGATGCATAACGAGAAAATCCAGCACTTGTGCAACATCTGCGGCAAAGCATTCAAATTGGAATTATCGTTAAAGTATCACCAGAAAATTCACTATATGGAGTATACACACAAGTGCAACAAGTGCAACAAAGGTTACTTCAGTCGCCGGGGTTTGGAGCGGCATTATAAAGTTCAGCACGAAGGCGTTCGCTTTCACTGCGAACATTGCAAGAAGACGTTCGTTGACAAGGATTGCTTCAAAAAGCACATACTATCACACGAGACCGACTTCGTTAAAGAGCAGCGCAAGTGCGATTTGTGCAACAAAGTGTTGCAGTATCCCAAAAGCTACTACAGACATATGAGGATGCATAAAGAAAAGAGGCAGCACGTGTGCAACATCTGCGGCAAACCCCTAGGTAGTCTTCAGAGCTTGAACTATCATAAGAACACGCATGCAGGAGAGAAGCCGTTCGTTTGCAAGTATTGCGACAAAACGTTTGCCGCTCCGACACAGTTGGCCAGACACGAACGAATCCACACCAAGACGAAACCGCGCGTTGGTCCAATCCGTACCATTGAAATATTCCAAATAGTGGCGGGTCACGTTTTCAAAGGTAACCAATTACCGAAAAAGGAGTGCCAACTGTGCAATAAAGTATTTGATAGCCCGTTACAATTAAGGAGGCATAAACATATTCACAAGGTTAAAGGAATTTCGTGCGACGCCGAAGGGTGCGATAAAAAGTTCAGGATCTTGAGCGAGCTTCGAGCTCACAAGAAGCGTGTTCACTTTAAAGGTGACGAGCACGTGTGCGATTTCTGCGGCAAAGCTTTTGGCGTTGAATACTCGTTAAAGTGTCACCTGAAAATTCACTATAAGGAGTATACGCACAAGTGCGACAAGTGCGACAAAGGTTTTTTTAATCGTCAAGCGTTGGCAAGCCATTATAAAGTTCAGCACGGAGGCATTCGCTTTCACTGCGAACATTGCAAGAAGACGTTCAGGAATGAGATTTACTTCAAAAAGCATCTGCTATCCCACGAAACAGACTTCGTCAAAGAGCAGCGCAAGTGCGACTTGTGTGACAAAGTGTTGCAGTACCCCCAAAGCTACTACAAGCATATGAGGATGCATAACGAAAAGATCCAGCACGTGTGCCACGTCTGCGGCAAATCCCTGAGTAGTCCTCAGAATTTGAACGATCACATAAGAAGGCACACGGGAGAGAAGCCGTTCGTTTGCAAGTATTGCTACAAAACGTTTACCAATCAAAAACTGTTGACCATGCACGAACGAATCCACACCAAGATGAAGCCGTACAGTTGTAAGGTGTGTTTGAAGAGTTTCTCGCAGTGCGGAACTTTGAAGATTCACATGCGTGATAGCAAGTCATTAGAGAACCACCACAAGAACCTGCACGAGCGCCGCGTCGTTCGCTTTAACTGCGAACAATGCAAGAAAACGTACTGGGATAAGAAACACTACGAGCAGCACCTCCTCTCTCACGGGACTGGTTCGACTCAAGAAGAGAAGCGCCAGTGCAATGTGTGCAACATGATACTGCGGTATCCGCAATCTTACCGCAAGCACATGAGCTCGCATAACAAACGATTCAAgaacGTCAGTTCGTACTCGACGACAACGATTAATATTAACGAGAGCGTAGacttttcgacaacgtgtcgTATATGTAACGCAATATTAGACAGCAAATCGAAACTGAAAAATCACAGTCGAATTCATCTCGTTAAAAGATACGGCTGTAACGTCTGCCATAGGAACTTCAAATACCTGTATGAGCTGCGGCAACACAAAGTGGTCGTGCACGTTAAAGATTCGCAGCGTTTGAAGTGCTTTTGCGACGTGTGCGACAAAGGTTTTGCCTCCGAAAGTAGATTAAACGATCATAAAAGAAAACACTTCAAGGAGTACAGCTTTAAGTGCGACAAGTGCGATAGAGGCTTTTACCACCCCAACGAGCTCCGAAAACATTACGACGTCCAACACCGTGGACTACGCTACCATTGCGAGCATTGCAAGAAGATGTTTATGAACGAGGGCTCTTTCAAAATACACATGACGACTCACAAGCCCGATTTtgttaaacaatacaaatgcGACGTGTGCGAAAAGGTGGTGCAAACCAAACGCGGTTATGCCAATCATTTGAAGCTACACAGCGGGAAGGATCTGCATATCTGCGATATATGCGGCAAATCGTTGAGCACCCCGCGAAGCCTCGTATGTCACATGAGGTTGCATTCCGGAGAAAGGCCGTTCGTGTGCGGGTACTGCGGCAAAAAGTTCATCAGCCAGACGTTGTTGAGCACGCACGAGCGAACGCACACCAACGAGAAACCGTACAGTTGCAAGTTGTGTTCAAAGAGTTTCTCGCAGTGCGGAACGTTGACGATTCACATGCGATATCACACGGGAGAAAAGCCGTATCGGTGCGATATTTGCGATAAAAGCTTCGTCACCGGCACGTTGATGAAAAGTCATCGTAAAGTTCACGGCACGCCACTGGCAATCTTGCTCGAATACTCGAACGGGGCGAAAACGTACCAATGCCATACATGCAAAAAAGCGTGCCAGAACCTTTCGAAATTGAAGGAGCACCTGGTAACGCATTCCGATGACCGACCTCACGCCTGCGACTTGTGTCCAAAAAAGTTCAAACGAGTCTACGCGTTAAAGTCACACCGGTGGCTGCACaacgacaataaaataaaagacagCGACGCGCAACCAGTCCTCCTTAAGTACCCGATTATAACGCAAACGAATGGGAAAAAAGCGCACCAGTGCTTTACGTGTGGCAAGGTATATCCAAACCTTTCGAAATTGAAGATGCACCAAATAACGCATTCCAACGATCAGCCATACGTCTGCGACTTGTGTCCGAAGAAATTCAAACGGGCCTTCACGTTAACGATCCACAAGCGATTGCACATCGACGGCGACAAGCCCTTCAAGTGCGAGGTCTGTCCAAAAACCTTTAAGAAAAAAGCTAACATGGTCACGCACCTTAGAAGGCACGCCAAGAATTATAAGTTGTTCTGCAACGTTTGCAAGGCCGGCTTCTATACGAACGGCGAATTCAAAATGCACTACGACTTTAAGCACGGCTCCGGAAGGTATAAATGTCACATCTGCGATAAGTTGTTTTACAGCAAAATGAGCCTCGACAATCATTTATCCAGTCACGAGGAGGACTACGGCAAATCGAAAGATCACAAGTGCGAAATGTGCGGTAGATTATTTTTGCTGAAGCTCAGTCTCAAACGTCACATTAAAATGCACGACAAGAAAGCCTTGTACGTTTGCGACTTGTGCGGCAAAACCTTCCAGTGGAAGGAATCGTTGAATAAGCACTTGGAGAGTCACAACGGTACCAAGAACTATCAGTGCGGGATGTGCGGGaaacaatttttgcaaaagACCTCGCTGGTCGTCCACGTCAGGATTCACATGGGCGCGAAACCGTACAAGTGCGACTTGTGCGATAAATCGTTCACTCAACGCAGCCCGTTGGTGATACACAAAAGATATCACACCGGGGAGCGGCCTTACGCGTGCGACATCTGCCACGAAGGATCCGTCAGCAAGACCGCTTTAAATATACACCTGAAGGGAAAGCACAAGATAGTAAAGTTCGATCCTCTATCGGCAATTGTTGAAATTGAAGACGACGATGATGAAAACGACGTTGTTTACGAATGCCAAATTTGTATGCAAACATTTCCCGAGAAAAGGTTCTATCTTAGGCACCACATGAACGAGTTAGGACAAACGTTCTGTTGTTGTCGATGCAGCCTCTTATTTTCGACCACCACCGAACTCTACAATCACTTCGAGACGCATAAAACCCACGACATTGCGATGCAATCGAATAACGACTCGTCCAAGTACGTGGAAAGTGAACAAGACGAAGTGATCTGTATATCCGACGACTCCAACGAGCCTCGTGACGAGCCGTCACAGACGACAACAAAGCCGATACACGTGGAGCACGGCTACGGACTGCCTCCGATCTTTCAAGACCAAGTGTCGGCCCAGAAACGATACAAAAGAAGAGATTATCTGCGCCTTCCCAAACCTAAAAAAAGGTCAAGTAACGTCAAAGCGAACTTTTCGGAGTCGGATTACGTAGAGTTGAAGCCCGACCAAGAAGTCATAGTTGTTCACTGGAAATGTTTGCGTTGCGAGCAGGTGTTCATGGACAAGAAAGTTCTGTTAAAGCATTTCGCGAGCGGAAAATGTTTCGTCAACATTTGCGACATATGCAGCGACACGTTTACCAAGAACAGCGACTTTTACGCTCACCATCTGGAGAAACACGCCAGCAGAGGAATTTGTAAATTCTGTTTCAAGACGTTCTTGTGCGAGAAGAATATCAAGGAACACATGATGCGACATTTCGAGCAGTTTCGACACGTGTGCGAGAAGTGCAATAAAGGATTTTATACAATTAGGGAATACAACAGCCATTATAAACATAGGCACACGAGGGTGCGGCACAATTGCCCCAAATGCGAGCGCACATACTCCGATTTGTATTATTTGAAGCGTCACGTGGCGACGCACGAGATTGCCCCCAAGTCCATAGCTTATACGATTTAG
Protein Sequence
MYKIVTNRVIEGSQLSKKECQLCNKVFDSALQLSSHKRIHKVKGIPCDAEGCDKKFKILSELRTHKKRVHFKGDKHACDLCGKAFASEDSLKCHQKIHYKEYTHKCDKCGKGYFGGQSLERHYEVQHEGVRFHCEHCKKTFMNKDFFKKHLLSHKTGFVKEQRKCDLCDKVLRYPQSYFKHMRMHNEKIQHLCNICGKAFKLELSLKYHQKIHYMEYTHKCNKCNKGYFSRRGLERHYKVQHEGVRFHCEHCKKTFVDKDCFKKHILSHETDFVKEQRKCDLCNKVLQYPKSYYRHMRMHKEKRQHVCNICGKPLGSLQSLNYHKNTHAGEKPFVCKYCDKTFAAPTQLARHERIHTKTKPRVGPIRTIEIFQIVAGHVFKGNQLPKKECQLCNKVFDSPLQLRRHKHIHKVKGISCDAEGCDKKFRILSELRAHKKRVHFKGDEHVCDFCGKAFGVEYSLKCHLKIHYKEYTHKCDKCDKGFFNRQALASHYKVQHGGIRFHCEHCKKTFRNEIYFKKHLLSHETDFVKEQRKCDLCDKVLQYPQSYYKHMRMHNEKIQHVCHVCGKSLSSPQNLNDHIRRHTGEKPFVCKYCYKTFTNQKLLTMHERIHTKMKPYSCKVCLKSFSQCGTLKIHMRDSKSLENHHKNLHERRVVRFNCEQCKKTYWDKKHYEQHLLSHGTGSTQEEKRQCNVCNMILRYPQSYRKHMSSHNKRFKNVSSYSTTTININESVDFSTTCRICNAILDSKSKLKNHSRIHLVKRYGCNVCHRNFKYLYELRQHKVVVHVKDSQRLKCFCDVCDKGFASESRLNDHKRKHFKEYSFKCDKCDRGFYHPNELRKHYDVQHRGLRYHCEHCKKMFMNEGSFKIHMTTHKPDFVKQYKCDVCEKVVQTKRGYANHLKLHSGKDLHICDICGKSLSTPRSLVCHMRLHSGERPFVCGYCGKKFISQTLLSTHERTHTNEKPYSCKLCSKSFSQCGTLTIHMRYHTGEKPYRCDICDKSFVTGTLMKSHRKVHGTPLAILLEYSNGAKTYQCHTCKKACQNLSKLKEHLVTHSDDRPHACDLCPKKFKRVYALKSHRWLHNDNKIKDSDAQPVLLKYPIITQTNGKKAHQCFTCGKVYPNLSKLKMHQITHSNDQPYVCDLCPKKFKRAFTLTIHKRLHIDGDKPFKCEVCPKTFKKKANMVTHLRRHAKNYKLFCNVCKAGFYTNGEFKMHYDFKHGSGRYKCHICDKLFYSKMSLDNHLSSHEEDYGKSKDHKCEMCGRLFLLKLSLKRHIKMHDKKALYVCDLCGKTFQWKESLNKHLESHNGTKNYQCGMCGKQFLQKTSLVVHVRIHMGAKPYKCDLCDKSFTQRSPLVIHKRYHTGERPYACDICHEGSVSKTALNIHLKGKHKIVKFDPLSAIVEIEDDDDENDVVYECQICMQTFPEKRFYLRHHMNELGQTFCCCRCSLLFSTTTELYNHFETHKTHDIAMQSNNDSSKYVESEQDEVICISDDSNEPRDEPSQTTTKPIHVEHGYGLPPIFQDQVSAQKRYKRRDYLRLPKPKKRSSNVKANFSESDYVELKPDQEVIVVHWKCLRCEQVFMDKKVLLKHFASGKCFVNICDICSDTFTKNSDFYAHHLEKHASRGICKFCFKTFLCEKNIKEHMMRHFEQFRHVCEKCNKGFYTIREYNSHYKHRHTRVRHNCPKCERTYSDLYYLKRHVATHEIAPKSIAYTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-