Rgig017205.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000056.1:4040118-4041527[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-08 3.5e-06 27.4 0.1 4 39 18 53 15 57 0.92
Sequence Information
- Coding Sequence
- atgggtaaaatttatgtacgaAAAACAACTAGAGCTAGTTTCAGTCAAAATGCTTTAGTAGAAGCCACGAATAAAGTTAATTCACATGAGATGGGAGTAAATGAAGCTAGCCGTGAATATGGAATTTCCTCCAGAACCCTAAGAAGACATCTAAAAAGTGGAAGCTCGATTGTAAGATTAGGCCGAGAGCCGGAATTAGGACAGGAGCACGAGAAAAGACTTGTTACACATATTAAATCCCTAGAAAAAATTGGTTTTGCTCCCGATACCACAGCAGTGAAAACTATAGCTTATAAGTTTGCAGAAAAACTACAAATCAAACACAGATTTTCAAAAGTTCATGATAGAGCTGGAGATGAATGGTTTAGGAGATTTTTAGaaagaaataaagaattaGGCATTCGAAAATCCGAAGGTTTATCTGTAGCTAGAGCAAAGGGAATGAATAGGAAGGAGGTAGACGATTTCTTTACTTTACTTCAAGAAATTCTTACAAATAATGATTTGTTTGATAAGCCCGGACAAATATATAATGTCGACGAGACAGGGatagaaataaacaacaaacCAGGTAAAGTAGTCGCTACCAAAGGTGCGAAAGATGTTTATTCGTTAACCAGCTCTGAAAGGGGAGAGAATGTATCCTTGGTTGCATGTTGCAATGCTGAGGGTAATTATATACCTCCCGTTTTGATATTCAAAGGGAAATATAAGAAAGATGAGATTGCTGATGGACTTCCGCCAGGTTCGAGTGTATTTATGAATCAGAAGTCGTCATACATAACCTCCGACTTGTTCTTCAAATGGTTTAGGGAATGTTTTCTGCCCAAAAAGAGAGCCGGTAAAGCCTTACTTATTGTAGACGGTCACGCCTCACATTGCAATGCAATTGAATTATTAGATTTGGCAGCGGAAAATAATGTTGTGTTGTTATGTTTACCAAGTCACACCACACAGGCACTTCAGCCACTAGATAGGGCATTCTTTAAGCCtctgaaaacttatttttttcaagaagCAAAAAGTTGGATGATTCAAAATAAGGATAGGAAGCTATCAAGAATGACAATCGCTAGATTAATAGGTAACGCATGGGGTAAAGCTGCAACTGTTGCAAATACAGCCTCAGGATTTAGAGCATGTGGAATACATCCGTTTAATCCCCAAGCAATTGAAGATCACTTCTTTTCAATATCGGATGCATCATTAGAAAATACAGCCCACATTTCTCGCAAGATATCTAATCAAGATATAAATCTACCTGTAGCATCAACTTCTTCAGCAGGTCCTACAACGAAAGCGAAAACGAAAGCTGGAACGTACGACACAACAGCAAACTTTTTTGGGAGAACCTGGACCCTCGAATCAGGAGCACACTTTACCGGCACCAACTATAGAATCTTGCAATAA
- Protein Sequence
- MGKIYVRKTTRASFSQNALVEATNKVNSHEMGVNEASREYGISSRTLRRHLKSGSSIVRLGREPELGQEHEKRLVTHIKSLEKIGFAPDTTAVKTIAYKFAEKLQIKHRFSKVHDRAGDEWFRRFLERNKELGIRKSEGLSVARAKGMNRKEVDDFFTLLQEILTNNDLFDKPGQIYNVDETGIEINNKPGKVVATKGAKDVYSLTSSERGENVSLVACCNAEGNYIPPVLIFKGKYKKDEIADGLPPGSSVFMNQKSSYITSDLFFKWFRECFLPKKRAGKALLIVDGHASHCNAIELLDLAAENNVVLLCLPSHTTQALQPLDRAFFKPLKTYFFQEAKSWMIQNKDRKLSRMTIARLIGNAWGKAATVANTASGFRACGIHPFNPQAIEDHFFSISDASLENTAHISRKISNQDINLPVASTSSAGPTTKAKTKAGTYDTTANFFGRTWTLESGAHFTGTNYRILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295039; iTF_01294990; iTF_01294998; iTF_01294968; iTF_01294939; iTF_01295045; iTF_01295005; iTF_00466046;
- 90% Identity
- iTF_01294939; iTF_01294990; iTF_01294998; iTF_01295039; iTF_01295005;
- 80% Identity
- -