Rgig005658.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- clz9_5
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000002.1:142935-147349[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-10 1.2e-07 32.1 0.0 5 37 22 54 19 57 0.95
Sequence Information
- Coding Sequence
- atGCCACGAAAATACATAAAGAAGCTGGGTGCTTATGGCAAAAAAAACTACGATCCCGTATATTTAGAGAGAGCGCTGGATGCAGTGCGCAAAAAAAGACTGAGCATGCGAAAAGCGTCAGAAAGGTTTGCAGTGCCATATACGACACTTAACAATCACTATCATGCGGCAGCTCTCTTGACATATGGTGGTCAACCTGCTCTTGACGAGCATTCTGAAACTTTGTTAGTGAATGCTTTGCAAACCTGTGCCGAGTGGGGTTTCCCATTAAAGTCCATTGATATTAGGCGAATCACGcagcaatatttaaatagtcgCGGCATCACTGAaaagcgatttaaaaataatatgccAGGAGAAGGGTGGTTTAATGGTCTGATGAAGAGGCATCCTCAGCTTTCAGTCAAGCTTGCGGAGAATACAAAGCGAGTGAGAGCCGCTGTAACATACGAGATTGTTGAGGAATATTTCCGAAATGTGGCGGATATAACCAGAGATATCTCACCACAAAACGTTGTAAACTATGACGAAACAAACTTCGTTGACGATCCGGAAGCGGTTAAGGTGGTAATGAAGAAAGGAAGCAAACACGCCTACAGGACACTTGACACCACCAAAAGCAGCACAACAGTTATGTTCGCAATAGCTGCTGATGGAACTCGTCTCCCTACTTATACAGTGTACAAAGCCAAACATATTTATGAAGGTTGGAAGGAGGGCGGATTACCAGGAGCAATTTACAACAGGTCTCCAAAGGGATGGTTTGCTTCTGAATTGTTTGACGATTGGTTCAGGACCGTAGCACTTCcatttttccgaaaattagAAGGCACCAAGTTGCTTATTGGAGATAACTTGCAAAGTCATATTACTGTCAGTGTCATTCAAGAGTGCGAAAATAACAACATTAAGTTTGTCTTACTCCCCCCCAATTCGACCCACATGCTCCAGCCACTGGACGTGGCATATTTTCGTCCTCTCAAAGCATCATGGAAAAGAGCACTGGAGGAATGGAAACTAAAGAATAGGGGGGTTTTACCAAAAACTATATTTCCTAGGATGTTGAAAAACACGGTTGAAGGACTTGGGGATCGCGAAATGAACAATATTTTAGCTGGATTTAGAGCCTGTGGCCTAGTCCCCTTCAATCCCGATGCTGTtcttgcaaaaataaaaagaaaagagCCTACTACATCGGAGGAAggaaacgtggcagaaacttCAATGACTGCAGTGCTTGTAGATTATCTACACGAGCTCAAGACTGGGCCTAATGATGCCCCAAAGCGAGGAAAAAGACTAAACATAGCCGCTGGTAAAAGCATAGGCACAGAAGATTTGGATAAAGGGAACCAGAACAGTTGCAAGCAACCCAAAACACGTAAGAGGCAAATAAGCGACAGCGAAGAGGAAGATGACTTACAGACATTGGAGGCGGAGGAACAGCACATCAACACAAATGATTATGAAATTGGAGAAAGTTCTGCTGAGCCAGCCAACATTATTCTTGATTCATCCAGGAACTGGGATATAGGACAATTTATCATCACAAAATATGAAACAAATAAGAGAGATCGATTTTATATGgctaaaattattgaaatattaggAACTGAGATAGTTAATCGAAACGAGGAAAAgtctaaaaaaattgaatcggAGTCGAACGAAACTAGAGAAGATTTCGAAGCGCAACTCGCGGAGGCCAAAGCCACCGCCGCTGCCGCCGTCGCCGCCCTCGCCGAAACGCGGGAACTATATCGAAGAGCTCACGCGACTAATGACGGCGGTCGCGAGAGTAGCGGCGCTGCCGCCAGCGttctcaatttaatttaa
- Protein Sequence
- MPRKYIKKLGAYGKKNYDPVYLERALDAVRKKRLSMRKASERFAVPYTTLNNHYHAAALLTYGGQPALDEHSETLLVNALQTCAEWGFPLKSIDIRRITQQYLNSRGITEKRFKNNMPGEGWFNGLMKRHPQLSVKLAENTKRVRAAVTYEIVEEYFRNVADITRDISPQNVVNYDETNFVDDPEAVKVVMKKGSKHAYRTLDTTKSSTTVMFAIAADGTRLPTYTVYKAKHIYEGWKEGGLPGAIYNRSPKGWFASELFDDWFRTVALPFFRKLEGTKLLIGDNLQSHITVSVIQECENNNIKFVLLPPNSTHMLQPLDVAYFRPLKASWKRALEEWKLKNRGVLPKTIFPRMLKNTVEGLGDREMNNILAGFRACGLVPFNPDAVLAKIKRKEPTTSEEGNVAETSMTAVLVDYLHELKTGPNDAPKRGKRLNIAAGKSIGTEDLDKGNQNSCKQPKTRKRQISDSEEEDDLQTLEAEEQHINTNDYEIGESSAEPANIILDSSRNWDIGQFIITKYETNKRDRFYMAKIIEILGTEIVNRNEEKSKKIESESNETREDFEAQLAEAKATAAAAVAALAETRELYRRAHATNDGGRESSGAAASVLNLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294982; iTF_01240394; iTF_01240393; iTF_01242003; iTF_01210428; iTF_01294940;
- 90% Identity
- iTF_01294982;
- 80% Identity
- -