Rgig007601.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000008.1:2684966-2686033[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.1e-10 1.1e-07 32.3 0.0 4 40 21 57 18 61 0.87
Sequence Information
- Coding Sequence
- ATGCCACGGGAACATAAGCATGTTCTAGGAACAGCGTTTCGTAGAAATTACGATTCAAACAATATGGAATTGGCTCTGGAGGCGATTGTAGACAATCAAATGTCACTTGGCCAAGCTGCCTACCAATTTAAGGTGCCAAAAACTACACTGTACAATAAATGCAAGGGCACATATGCCTCAGATAAGCTGGGAAAACCACCTGTTTTAAGTGTTCTTGAggaaaaaagaataattagtGCTATGATATCTGCAGCCAACTATGGATATCCATTTGTAAAGCAAGATATTCAAGAATTTGTTCAACTTTACCTGAATCGTAAAGGTGTTGTTACACGATGTTTTACTGACAATATACCAGGTGGTGAATGGATAAAATCTTTTTTGAAACGGAATCCTGAATTAAGTCCAAGAAATTCTGAAAACATAAAACGTTCACGAGCAGAAGTGACTCCTGAAATAAtcaatgtttattttgatgaGCTCCAAGTGACCATGAATGATGTTTTGTCAGAAAACGTGATTAACTATGATGAGACGAACATCACGGACGATCCtggaaaacaaaaagtttatataaagaGAGGAAATAAGCATGCTAGAAGAATTCTGGATAACTCTAAGTCATCCACTTCAGTTATGTTTGCTGTCACTGGAGATGGGAAATTGCTTCCTTTATACGTCGTatacaaagcaaaaaatctaTATCCAGAATGGTTAGAAGGCGGACCAAGTGGTTGTCATTACAACCGTTCCCCAAATGGGTGGTTTGATGGAGAATTATTTGAGGATTGGTTTTTTAAAGTAGCATTTAGCTACCTTAGGGGCAAAGAAGGGAGAAAAGTGATCGTTGGTGATAACTTACAAGGCCATTTATCTGAAAGGGTGATTAAAGAATGTGAAGTACACAATATTGCTTTTGTGTTTCTACCTGCAAATAGCACCCACATCTCCCAACCATTAGATGTTTCAGTATTTCGCCCTGTTAAAGGAGCTTGGCGTGCAATTTTAACTGAATGGAAACGAAAATGTAGAGGAGTTTTCCCAAAACTGTTTTTCTCgcattattga
- Protein Sequence
- MPREHKHVLGTAFRRNYDSNNMELALEAIVDNQMSLGQAAYQFKVPKTTLYNKCKGTYASDKLGKPPVLSVLEEKRIISAMISAANYGYPFVKQDIQEFVQLYLNRKGVVTRCFTDNIPGGEWIKSFLKRNPELSPRNSENIKRSRAEVTPEIINVYFDELQVTMNDVLSENVINYDETNITDDPGKQKVYIKRGNKHARRILDNSKSSTSVMFAVTGDGKLLPLYVVYKAKNLYPEWLEGGPSGCHYNRSPNGWFDGELFEDWFFKVAFSYLRGKEGRKVIVGDNLQGHLSERVIKECEVHNIAFVFLPANSTHISQPLDVSVFRPVKGAWRAILTEWKRKCRGVFPKLFFSHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295004;
- 90% Identity
- iTF_01295004;
- 80% Identity
- -