Rgig015180.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000037.1:6503852-6504832[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-11 2.4e-09 37.6 0.0 2 39 11 48 10 53 0.93
Sequence Information
- Coding Sequence
- ATGGAGAAGAGAAAGTACAATACTTGGAAGCAAGAAGATATGGATGAAGCTTTACAGAAACATCGGAGTGGAGAAATTGGATTTAATGAAGCCTGTAGAAGATTTAATATACCGAAACCTACACTGAgacgacatttaaaaaatttgaatacaagAACAAAGTTTGGAAGACCTAACGATATGCCACCAGACATGGAAGAGATACTGGCAcagcatttaataaatttagagtCTTGTTTCTTCGGATTAACTACCACTGAATTTAGGAAGCTTGCATTCGAGCTCGCTGAAAAATTTCAACTACCTCATCGTTTTAACAAAGAGAAGAAAATAGCGGGCAAAAAGTGGTATTATAGGTTTATGAAAGAGCATCCTAATTTGTCCTTGCGTGTTCCAGAACCAACATCGATGGCCAGAAGTAAAGGGTTCAATAAAGAACGTGTTAATGAGTTTTTTGATAAGTACGAAGAAATACTGGATAAATACAAGTTTGCTGCACACCAAATATACAATATGGACGAAACTGGATTATCCACTGTTCACAAACTTTCCAAAGTTATTGCTCAAAAGGGAAAACACCAAGTGAGTGCAATCACAAGTGGAGAAAGGGGTCTGACCACAACTTGCATATGTGTGATGAATGCAGCAGGCGAATTTATACCACCTATGATAATATTTAAGAGCAGTAGACTGAATGATGCCTTAAAAAAAGGAGCTCCACCAAACACAGCATTTGGATGCTCAAAAAATGGATGGATAACATCAGAACTTTTTGTTCAATGGctacaacattttattaagtgCACGAGATTAGAAAAAAGTGACCAAAAACAAATGTTGCTTTTACTAGATGGTCATAGCACACATACCAAAAATTTAGAAGCGATCGCGATGGCTCGGGATTACGGCATAGTAATGTTATCTTTTCCTGCTCACACAACACATCGTCTACAACCGTTGGACAGATCGTTTTTCAAATGA
- Protein Sequence
- MEKRKYNTWKQEDMDEALQKHRSGEIGFNEACRRFNIPKPTLRRHLKNLNTRTKFGRPNDMPPDMEEILAQHLINLESCFFGLTTTEFRKLAFELAEKFQLPHRFNKEKKIAGKKWYYRFMKEHPNLSLRVPEPTSMARSKGFNKERVNEFFDKYEEILDKYKFAAHQIYNMDETGLSTVHKLSKVIAQKGKHQVSAITSGERGLTTTCICVMNAAGEFIPPMIIFKSSRLNDALKKGAPPNTAFGCSKNGWITSELFVQWLQHFIKCTRLEKSDQKQMLLLLDGHSTHTKNLEAIAMARDYGIVMLSFPAHTTHRLQPLDRSFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294936;
- 90% Identity
- iTF_00461487;
- 80% Identity
- -