Rgig003479.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:36279134-36287138[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00079 0.1 13.1 0.0 2 38 58 93 57 96 0.94 2 2 2.5e-09 3.3e-07 30.7 0.0 1 35 161 196 161 201 0.93
Sequence Information
- Coding Sequence
- ATGTCCCTGAGCTATCATCTGCTTTCTTATCTTTACACTGCGAAAAGACGGCTGACCCCCGGTCAACCCGTCGCAGAAAATTCGTCCGTAGATTATGgttatgataattttaatcaagATGTACAAGTACCCTTGGACTGCTGCCCTTCGCGGAAGTCTCCTAAATGGACTTCCGAAGACCTACATCGCGCAATAGAATTAGTACGTTCGGGTATCCCCATAAAACCCGCAGCCGAACAGTGTCACATCCCCGTAATGACGCTCTGGCGGCGAACTCGTGCCGTTGGGGTTGTTAGTAGTCGCGCAATGACTTGTTCGTTACGACCCGAAAAGTCTCGTAGATCGCCTAAAAGGAAGAATATGTCGAAGCTTTTAATCGTTAGCAACTCGTGCATCGAAAATTCTTATGACCTTTCTTGTCAAAACGAGGACGAAATTATTAATTACCCCAACTTACTAAAGCTTAAAACCCCGACATGGACGCAAGATCAGCTAAAAGAAGCAATCGACGCCGTCGTGAGGCAGAGAATGCGTTTTACTCAAGCTTCCTCACGTTACGGAATTCCCAAAGGGACGCTTTATGATAATATTCTCGGAAAATCTAAGCGCATGGCTGTTCTCGAGGAAGCAAGTTTGACGCCTAACGAAGAAGCGGCTGTTTTGGAATTTTGTTGCGACGTTTCCGTTTCCCCCTACAATAGGCGGACGAAAAAATCTCTTCAGTCGATCttaaattttgtggaaaaaatTAGACGCGTTCGCCACCCCGAATTCCTGTTTACCGGCCTCTCGGGGTTTAGATGGTGGTGGGCTTTCTGCAAAAAGCACAGCATCGTCTCGCTTTTCTACGATAACGGGGCAAACAATTGA
- Protein Sequence
- MSLSYHLLSYLYTAKRRLTPGQPVAENSSVDYGYDNFNQDVQVPLDCCPSRKSPKWTSEDLHRAIELVRSGIPIKPAAEQCHIPVMTLWRRTRAVGVVSSRAMTCSLRPEKSRRSPKRKNMSKLLIVSNSCIENSYDLSCQNEDEIINYPNLLKLKTPTWTQDQLKEAIDAVVRQRMRFTQASSRYGIPKGTLYDNILGKSKRMAVLEEASLTPNEEAAVLEFCCDVSVSPYNRRTKKSLQSILNFVEKIRRVRHPEFLFTGLSGFRWWWAFCKKHSIVSLFYDNGANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -