Rgig004139.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- bab2
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:45593335-45604822[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.3e-11 7e-09 36.1 0.0 1 39 372 411 372 415 0.90 2 4 4.6e-12 6.1e-10 39.4 0.1 1 39 426 464 426 468 0.95 3 4 2.6e-16 3.4e-14 53.1 0.0 1 45 481 526 481 526 0.97 4 4 1.8e-15 2.4e-13 50.4 0.0 1 39 533 572 533 576 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGCCAACATTATTGTTTAAGATGGAACAATTACCAAAGTAATATGACCTCAGTTTTTCATCAGCTTTTACAAAATGAAGCATTCGTGGATGTTACGTTAGCTTGTAAGGATTTATCGTTAAAAGCacacaagGTAGTGTTATCAGCTTGTTcctcgtattttcaaaaactgtTGTTAGAAAATCCATGTAAACATCCCACGATAATTATGCCGCAAGACGTGTGCTACGCTGATCTCAAATTCATCATTGAATTCGTGTACAAAGGAGAAATCGACGTTTCCCAAGCAGAATTACAGTCACTTCTCAAAACAGCAgaccaattaaaaataaaaggtttATGCGAATCGGACGAAAAAGACAATTCTTCATCGCCCCTTTTCATACCGAAAAGTCATCCGAAAATTTGCAGAGTGACCTCCCCTATTCATTACAGAAagttagataataaaaaacacaAGTTTAGAGATTTTGATCCAGATCCTTTCTCAGATAGAGAAGAAGATATTAAAGACAATATAATACAAGAAAATATATCCGATGACGATAGTGATGTACCTTTAATCGTTGATGAGGGACCAAAGCGAAAAAAATTGACACAATCACACTCGACGCCAATAAACATGAGTAGTCATGGTCTTTTGGCTGGACAGgcTATATTCTCTCAGTTTTGTGATAATGACGATTTCCCTCCGGAGCCTCCTGCTCCTTCAGCAACGCCAGTTGGTCATGTTGATCTCCAAGAACATTCGCCGACtcgtaatttattgcaatCTTCACATAGAACAGATTTGTCAGACGTACATGTGAAATATGAAgacattaaaaaagaaacgactattaaatttgaaacgcTAAGATCGTATGATCACGATTCGATGATGGATATGGATGCTTCTCATTTATCTGGACATGATCATTCTATGGAAAGTCACGAAGACGCAGATAGAGCGATGCATTCGATGATGGTCACGCCAGAATTAATGGGGATTATGCCAGGCGGTTCGGGAAGATTAGATCCATCGAATAGTGAAAATGGTCAGTCAAAAAGTAACGGTCATTCAGATCATATAAACAGTAGAACACACGGAGGAGGGCCTAAAACGTGGACGCAAGAAGATATGGAATTAGCTCTAGATGCCTTAAGAAATCATAATATGAGTCTCACTAAAGCTTCAGCTACCTACGGCATTCCTTCCACAACATTATGGCAAAGAGCACATAGATTAGGCATAGATACACCTAAGAAAGAAGGTCCTACGAAATCGTGGACGGAAGAAAATCTTAATTCTGCTCTTGAAGCTTTAAGAACTGGAACTATATCTGCAAACAAAGCAAGTAAAGCTTACGGAATACCTAGTAGtactttatataaaatagcTAGAAGAGAGGGCATTAAATTAGCGGCACCTTTTAATGCAGCACCGACAACGTGGTCGCCCGAAGACTTAGAGAAGGCGTTAGAATCTATAAGATCTGGTCAGTCATCGGTGCAAAAAGCATCGACAGAGTTTGGGATACCAACAGGAACATTATATGGGCGATGCAAAAGGGAAGGAATAGAATTGTCTCGATCTAATCCGACGCCATGGTCTGAAGATGCAATGGGCGAAGCCTTAGAGGCCGTGAGaTTAGGACACATGTCTATTAATCAAGCTGCCATTCACTATAATCTGCCATATTCGTCTTTGTATGGTAGGTTTAAAAGAGGCATTAAATACGATACAGAAACGATTGACTCTAATAACTCAGATAGCCAATCACAGCCCGATTCTCAAGTACTTGTTATGGATTATCCCAATTCTCATCAACAAATTCAATATCAACACCACTCGAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESDEKDNSSSPLFIPKSHPKICRVTSPIHYRKLDNKKHKFRDFDPDPFSDREEDIKDNIIQENISDDDSDVPLIVDEGPKRKKLTQSHSTPINMSSHGLLAGQAIFSQFCDNDDFPPEPPAPSATPVGHVDLQEHSPTRNLLQSSHRTDLSDVHVKYEDIKKETTIKFETLRSYDHDSMMDMDASHLSGHDHSMESHEDADRAMHSMMVTPELMGIMPGGSGRLDPSNSENGQSKSNGHSDHINSRTHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDTETIDSNNSDSQSQPDSQVLVMDYPNSHQQIQYQHHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_01284853;
- 80% Identity
- iTF_01295310;