Rlut011127.2
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294037.1:62083250-62089834[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.034 2.2 9.9 1.6 2 23 289 311 288 311 0.90 2 12 0.00086 0.057 14.9 0.1 2 23 318 340 317 340 0.91 3 12 0.18 12 7.6 0.5 1 23 1268 1290 1268 1290 0.96 4 12 1.2 79 5.0 2.1 1 20 1305 1324 1305 1331 0.80 5 12 6 4e+02 2.8 2.6 2 21 1334 1353 1333 1354 0.92 6 12 0.0017 0.11 13.9 3.2 1 23 1380 1403 1380 1403 0.96 7 12 0.0045 0.3 12.6 8.3 2 23 1572 1593 1571 1594 0.95 8 12 0.031 2.1 9.9 5.3 1 23 1783 1805 1783 1805 0.97 9 12 0.52 35 6.1 1.1 1 23 1811 1836 1811 1836 0.97 10 12 0.69 46 5.7 3.4 1 20 1880 1899 1880 1901 0.92 11 12 0.031 2 10.0 0.7 2 22 1929 1949 1928 1952 0.87 12 12 0.032 2.1 9.9 1.6 1 23 1994 2017 1994 2017 0.95
Sequence Information
- Coding Sequence
- ATGTGCACTTCTTGTTTTATTGCACTTCGTACGGGGTACGAATTTAAGAAGATGTGTCAGTTCACAGAACAAAGattccaaaattataattataagtatCGCAGACCGTTTGGTGTGGGTCCTGGTAGCGCACAATTTCACGTAACACTTAACGAAACTCGCCAGCCCAACAACAATAAGAATGGTTATTCTGGTtgccaaaatattaattttttacaagcAGACACAAGTATCGACATAACAGAACATCACTTATACGATGCCAGCAAACCACCGCCCCGAAAAGACTTTCTAAAAGATCCCATCATAGATCAAGTTATAAAAACTCCTATCGAATCTCTTCCTCCTTCTAAAGTAGAAGATAAGTCTGCTGAAGTGAAACCAAGTGACATAAAGCCAATTGAGGCTAAACCAGTAATCGAATCAAAGCCAATTGAAATTAAGCCATTAATTCAAGAAAAGCCGGTGGAAGTAAAACCAGCTCCTCAAACAAAGTCTATTCAAGACGCGATCAAAGATATAAAAGTTCCTGATATAAAAAGACAACAAGTTGCTAGGAAGAAAATAACTGCTTCTTTACatataagaaaaaaatataagatTGGTAGCGAAATATCCATTCTGAAATCTGAAAATAGAAGTGCAACCAAAGTAGATAGCATTCCTGAAggaaaaaatgtaaacaaattagaTATGATTATCAAAAGAGCTTGTGATGAAATTGAATACCTTAAGGAAAATTATATTACACCAAAGTCTTTATCctgttattcaaaaattgccAAGCTTTCTAAACGTTATAACTTGGAAGAACTGAATAAAGAAGCCAATTCCTACTATTTTGATTCACTGGACACTGAAGTTTCTTGCCAACATTGTTCCACAACTTTCGATACGAGGTACAAGTTGAATCTTCATGAAATTGAAAGTCATCCTGAAAAGCAGCTATGGAAGTGTACTGATTGTGATCAAGAATTTGTTAACGAAATCAACCTGAGGCAACACATAGATGATGATCATTCTAAACCTGTAATACCAAATGTGGAAGAAAGTCAAGTACCACCGGAGAAAATTGTTGAAGAACATAGCGAAATTAACACTCCAGAAGTCGAAATGGAAATACCTGCAGAGGAATTACATGATCCATTAATTGAAGCACAATCTGAAATTGTTGAAGATTTAAATGATAAATTGCAAGAAAATAAGGAATCAAATATTGAACTTGAAAAGGATGTGGATaaggatgattttattgaaaaggaTGCGTTATTGGTTGTATCAAAAGTGGTGGACGATAAATTAGATGAGAGCAAGAAATGCAGACCTTCCTATGAAGATGATGATGAAGATTTCATACTTGAAGATAATGCTTTTAATATTTCTGACAGTGAAGATGAGAGCATAGATATTGAAATCAATGAATCTGAAATTAATCAGTTACTTCAAGACGATTATGAAGGTAAAGTTATCAAAACtataacaaacaaaacaaaCGAAATGAAgaataaagaagaaaaagaattgTCAAAATCTCCATTTGTTATGATTCTACCTAAAAATTCAGTTGTCGAAAATCAAAAAGTTGGGAAAATTTTGTCCAATTCCGTTATTCAAGTTGAAGAGTTATTATCTAAGAAGCAAATTGAAGAAAAGGTAAATAAATTAGCTGAAATTCAATTTGTTGTGTTGCCTAGTAAGCAAGCAAATACATCAACAATTAAAGAGAAATTATTAATGAATAAAGAGTTGTCTATCACGAATTTGAACCTTGAAAGTAAAATTCAGAAGGAAGAAGTTCAGAAAGATTCACAGAAACCTCAGTTGGAGATTTCAATTTCCGAAAATGTTCGAAAAGAATTATCCAAATTAACTGTGATTTCCCTTGTTAAGGAAGATAAAACAACGAAAGAAATATCAAAAAAGGCAAatgataaaattcaaaaagaatcGCCTAAACCAGCCACGTCaactttaattgaaattgataaagaagtatctaaaaatcaaattattattgaaaaaattgacaaattatCACCTAAAAAACATGGAGATGcgcaaataattacaaataaattgaaaGAATCACCTAAAACAAAAGGAAATGTCCAAACTGAGAAGAACAAAGTTCAAAAAGAATCACCTAAAAAACAAGATAAAACCAAAACAACCCCTGAAAAGGGAAATAGAGTGAAAGAATCAAATGAAGTTCAGAAGGAATTGACTAAAAAGCAGGGTAAATCAACTCCCGAAAAGGGAAATAAAATAAGAGAAACATCTGAATCACCTAAAAAACAAGAAAAGGGAAATAAGTTGAAAGAGGTGGCAGAAGTGAAAACGGAAGTTAGAAAGGAATCATCTAAAACCCAAGATAGACTTGATAAGCGAAATAAACTGAAAGAATCTGCTGAAATGAGAACAGAAGTTCAACAGGAATCGTCCAAAAAACAAGATAAACCGGCCCTTGAAAAGGAAATTAAACTGAAGAAATCAGATGAAGTGCAAACTGACGCTGAAAAGAGAACAGAAGTTCAACATAAACAAACCcctgaaaaagaaattaaactGAAAGATTCGGATGAAGTGCGAACTGACGTTGAAAAGCACGATAAATCGACTCCTGAAAAGGGAAATGAATTGAAAGAATCTGCTGAAGTAAATATTAACATTGAAAAGGAAACCTTTAAAAAACAGAAGTCGACTCCTGAAAGGAGAAATAAACTAAATGAATCGCCTAAAATTAAAGGTGAAAAATCTCTGAGAAATCAAGATAAATCAAGTGTTGAAAAGGGAAATAAACTGAAAGAATCCTTGGAAGTTGAAGTTAACACTGTTCGAAATGAGTCCTCTGAAAAACAAGATAGGCCAACCACTGAAAATGATAATAAGCGGAAGGAATCTCCTAAGGTTAAAAAGGAGCTATTCAAAAAACAAGATCAAGCAACGCTTGAAACGGTTGAAGTTCATTCTAAACCTGAGATTCAAAAGGATTCGTCTACAAGGCCAGAAAGAATAAATAAACTAACTGAACCggcagaaaatttaaaaaccaataaTGGAAAAGAAGATATTCCAACTGTTTTGAAAGTAAACAATGAGAAAAAACCGTTAGAAATGGAAGCAGAAGTGATCAATGAGTCGcccaaaaagcaaaatattgCAACCACtgaaaaagtaaataaacagAGAGAATTGTCCGAAACTGAAGATATTCCAGAAGAATCGCCTGAAATGGAAGTAGTGCAAGAGAAATCTTCTCAAGAACCAGATATGCCACCTCCTGGCAAAGAAAATATATGTGAAGAGTCGCCTGAAATTGAAATGAAGCAAGATATGCCAACACTTGAAAATGTAAACCAAGTTGTAAATGAAGTGCCCAAGATGCATTTAAATCCACCTATTCTTCAGAGTGAAACTGACTTGGTATTATCTCAGGTGCAGTTAAATCCTGAAAATGAAGTTGAGGCTAAAATGGACGTGGAGCCTCCAATTCTTGAAAACGAAATTAGCACTGAATTGTTTGATTTGCAGTTGGATGCTCCTGAAATAGTACATAAAGAAATGGATGTAGTTGAACCTAAATATGTAAAGCCTTATTGGTATAAGTACATAAACTATATTAAGTGTTTCATCTGTCACAAATTGTGTCGTAACAAGTTACAATTGTTACAACATTGTAAATTCGTTCATGTTCCCAGAACCATTCCGCCAAAAGTAGTTGAAGAACAAGAAGAAAGAATTAGTGAAAGTGAAGTAACTGATGGAGAAAGAATAAAAGTATACAAAAGAGATGAAACACCTTTTAAGTGTAACATTTGTGACAAGCAGGTTCTGGCAAAGGAATATTTAGCTATTCACATGCATATTCATGTTCCATATAGTTTTCTATATGATAATGATAGAATTGACAATTTTATATGTTACATCTGTGATAAGAGCTTCCCAAAGGATAGGTTTATGAGATTGCACAATTTGCAAGTACATCAAACCAGGAATACGGTTTGTAAGACATGCACCAGGTTATTCAAGAGTGAATTTTGGTATAGCAGGCACAAGTGTGTAATGCCGCCTCCTCCTGCTGCCATTGTTGAAAAAAAGGTAGAAGTGGCAGTTGAAGATGATACACAGAGTAATTCTTATATATGTAATGTTTGCGATCGCAGATTTGCAAGATTAAGATTTTTGAAGTCACATCAACATCGCATGCATCCGGAAGCTTATGAACTTATCTATGGTAGCGCTGGCACTAGTAATTCCAGCGCATTGTCGGACAGCGTAACCGAAGCAAGTGACGGTGTTAGTGTGGTAGATATAACAGAAAGTGTGTCGAATTTTAATGATGAAGCTTCAGAAACTTCCGCACCGCCCAGGAATATATTTGATGTTGAGGCTAAATTTCTGAAATCAAGTGAAAGTAACTTTAAGAGAAAAAGTACTGACAGGATGCCGAAACTTCAATGTGATTTTTGTGGTGCCATGATATCTGAGAATGTGTACGACAGCCACATCTATGAGCACAACAAAAGGCGAATTGAAAAAGCTCGGAAATCTGACGAAAAACCGTTAGCGGAAACTCCCAAAAAACCGTTAGCGGAAACTCCCAAAACTGAAGCCCCAACACCGGTTACGCCAGCGATCGTCGCAGAGGAAGCAGCGTCGACCTCGGAGACCACACCGAATCCAACTACAAGCAGTGCTGAAAAGCCTCTCATGAAATGTACATTTTGCTTCCGAATGTTTCAACGTAAATATCATCTCCTCAATCATATGAGAAAGCATCATGGAGAGCAATCAGAAGGTCTTGAAACGCAATCAGCTAATGAAGAAAGCGAAGTCACCAAAGCATGTGATGAAAATGATACTTCCAGAAACGAATCTATGGAAATGTTGGAATGTTGTGGGCGCCAGTTCAAACTTAAAGCCCACTATGCAAGACATTGCAGCACCAAACATCCCGACATATTCTACAAAAGCACCCCATCGAAACCCTCATCTCCGGTTCCTCTTGCCGACTCATCAGCAGTCGTATCAACCCGACGCTCTAACTCATTTAAACCAAAAGAGAATGACAACGAAAACGTTTCAAACGAAGAACCACCCGTCAAGGAGAAGCGCGTGATTAAAAGAAAAACGTTAGATTTGGTTGAAACGACCGAACCGGTTAAGAAGGCAAAAGTAGTCAGTGAAAGTGCAAGTACCCCGGATAGTTTGAAACGAAAGAAGACATCGGAACCGGAAGGTGAATCGGCTCGTAAAAAGAAGGCGCCGCCGCCACCACCACCAACATCGTCGTCGCCGCCGCCTGCAGCTGACAGCAGCGACGAACAGGAAGGTCCGCTTTACAAATATCACTGCACCACCTGTTCGAGGAAGTTCAAACAATATAATCAACTGCGCGATCACAACAACGTTCACACCGGGGATCGCCCGTATAAGTGTTACTTTTGTGAACCGGTACGTGGATTCACGCAAACGTCGTCGTTGTACGTGCATTTTCGACGTGTACATGTCGCGATCGTTAACAATGTCGAATGGGAACCCTACTCGAAAAACGGGGTCTGTTTGATCTGTTCCGGTGTGTTCGAAAAGCATACGGACATGTTCCAGCACGCTAAAGAGTTTTATGTGGAGAATGGTTTTGATTGCAAAGTTTGcaacgaaaattttacaatgtcGTGCCACTATCGTGTACATTCCAATAATGCTTTGGAAGGTGAACGTGACAATGATACGGCTTCGAACAATTCCGGAGAATTCTCACACGCGTCGAAGAATCAATTAATTCGATGCGATCCATGTGACAAATCTTTTAAAGAACGCCGGGATTTAAAGCTTCATAAAAAGAGTCTTGCGCACGTTCAGCAGGTCCAAACGTTAAAAAAGCAATCGAATCACAAGAAGGGCGACGAAAGCACAACCATAGAGGGACTGGCCAATAGCGTGGGCGATATTTTAAAAAGGTTAAGTGGAATGAAGAAGCACAGATGTTCGCCGTGCGGTATAACCTTTGATAAAAGATTGGATTTGAAGAAACACCGGCGGGAGATTCACCGGCGGCAAGTTCATAGGAAGAAAAATAAACCTGTGATCGCACAAAAAGAAGATAATGTGCAGGAAGCGTCTTCTAGTACCGACGTTCCGTTTATGGACGAAAACGATATATTAAAAAGTATTACTGCCAAAAGAAGACCGAGTGTGTTGTCGGAGAATAGCGATGATAAAATAGACAATCAGACGGATGTGGACGAATGCGATGATAAAGTGGATCAGTCTAGTCAGAGCAGTAGTCAAGAAGAAGACGATTCTGGGAGCGTTAAAGGTCTTTATGACGACAGCATTGATGCTGATTTTGACGCCATGAAACTAGTCGAATCTTTACAATTACCCGACGAAGTGATTGCAGAGGTTATAGCCGAAGAAGCTAGCAGCGAAATTTTAAGTAGTCAAATGGCATCGGCAGTGGAAGAAATAGCTTTTAACGTGGGTTACCCTAGCGTGAGTGACGATTTTCCTCAAGATATAATCGAGAGTGACGGTGTCACTTATACAAAAATGCGTGGAGTTCCAATCGACAGCCTCGAATAA
- Protein Sequence
- MCTSCFIALRTGYEFKKMCQFTEQRFQNYNYKYRRPFGVGPGSAQFHVTLNETRQPNNNKNGYSGCQNINFLQADTSIDITEHHLYDASKPPPRKDFLKDPIIDQVIKTPIESLPPSKVEDKSAEVKPSDIKPIEAKPVIESKPIEIKPLIQEKPVEVKPAPQTKSIQDAIKDIKVPDIKRQQVARKKITASLHIRKKYKIGSEISILKSENRSATKVDSIPEGKNVNKLDMIIKRACDEIEYLKENYITPKSLSCYSKIAKLSKRYNLEELNKEANSYYFDSLDTEVSCQHCSTTFDTRYKLNLHEIESHPEKQLWKCTDCDQEFVNEINLRQHIDDDHSKPVIPNVEESQVPPEKIVEEHSEINTPEVEMEIPAEELHDPLIEAQSEIVEDLNDKLQENKESNIELEKDVDKDDFIEKDALLVVSKVVDDKLDESKKCRPSYEDDDEDFILEDNAFNISDSEDESIDIEINESEINQLLQDDYEGKVIKTITNKTNEMKNKEEKELSKSPFVMILPKNSVVENQKVGKILSNSVIQVEELLSKKQIEEKVNKLAEIQFVVLPSKQANTSTIKEKLLMNKELSITNLNLESKIQKEEVQKDSQKPQLEISISENVRKELSKLTVISLVKEDKTTKEISKKANDKIQKESPKPATSTLIEIDKEVSKNQIIIEKIDKLSPKKHGDAQIITNKLKESPKTKGNVQTEKNKVQKESPKKQDKTKTTPEKGNRVKESNEVQKELTKKQGKSTPEKGNKIRETSESPKKQEKGNKLKEVAEVKTEVRKESSKTQDRLDKRNKLKESAEMRTEVQQESSKKQDKPALEKEIKLKKSDEVQTDAEKRTEVQHKQTPEKEIKLKDSDEVRTDVEKHDKSTPEKGNELKESAEVNINIEKETFKKQKSTPERRNKLNESPKIKGEKSLRNQDKSSVEKGNKLKESLEVEVNTVRNESSEKQDRPTTENDNKRKESPKVKKELFKKQDQATLETVEVHSKPEIQKDSSTRPERINKLTEPAENLKTNNGKEDIPTVLKVNNEKKPLEMEAEVINESPKKQNIATTEKVNKQRELSETEDIPEESPEMEVVQEKSSQEPDMPPPGKENICEESPEIEMKQDMPTLENVNQVVNEVPKMHLNPPILQSETDLVLSQVQLNPENEVEAKMDVEPPILENEISTELFDLQLDAPEIVHKEMDVVEPKYVKPYWYKYINYIKCFICHKLCRNKLQLLQHCKFVHVPRTIPPKVVEEQEERISESEVTDGERIKVYKRDETPFKCNICDKQVLAKEYLAIHMHIHVPYSFLYDNDRIDNFICYICDKSFPKDRFMRLHNLQVHQTRNTVCKTCTRLFKSEFWYSRHKCVMPPPPAAIVEKKVEVAVEDDTQSNSYICNVCDRRFARLRFLKSHQHRMHPEAYELIYGSAGTSNSSALSDSVTEASDGVSVVDITESVSNFNDEASETSAPPRNIFDVEAKFLKSSESNFKRKSTDRMPKLQCDFCGAMISENVYDSHIYEHNKRRIEKARKSDEKPLAETPKKPLAETPKTEAPTPVTPAIVAEEAASTSETTPNPTTSSAEKPLMKCTFCFRMFQRKYHLLNHMRKHHGEQSEGLETQSANEESEVTKACDENDTSRNESMEMLECCGRQFKLKAHYARHCSTKHPDIFYKSTPSKPSSPVPLADSSAVVSTRRSNSFKPKENDNENVSNEEPPVKEKRVIKRKTLDLVETTEPVKKAKVVSESASTPDSLKRKKTSEPEGESARKKKAPPPPPPTSSSPPPAADSSDEQEGPLYKYHCTTCSRKFKQYNQLRDHNNVHTGDRPYKCYFCEPVRGFTQTSSLYVHFRRVHVAIVNNVEWEPYSKNGVCLICSGVFEKHTDMFQHAKEFYVENGFDCKVCNENFTMSCHYRVHSNNALEGERDNDTASNNSGEFSHASKNQLIRCDPCDKSFKERRDLKLHKKSLAHVQQVQTLKKQSNHKKGDESTTIEGLANSVGDILKRLSGMKKHRCSPCGITFDKRLDLKKHRREIHRRQVHRKKNKPVIAQKEDNVQEASSSTDVPFMDENDILKSITAKRRPSVLSENSDDKIDNQTDVDECDDKVDQSSQSSSQEEDDSGSVKGLYDDSIDADFDAMKLVESLQLPDEVIAEVIAEEASSEILSSQMASAVEEIAFNVGYPSVSDDFPQDIIESDGVTYTKMRGVPIDSLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -