Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294042.1:26310338-26312060[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.006 0.4 12.2 1.4 1 23 257 281 257 281 0.98

2 8 0.14 9.4 7.9 6.3 1 23 287 311 287 311 0.96

3 8 0.97 65 5.3 0.6 5 23 323 341 318 341 0.89

4 8 0.01 0.67 11.5 0.2 1 23 348 372 348 372 0.98

5 8 0.022 1.5 10.4 1.1 2 23 380 403 379 403 0.92

6 8 1.5e-05 0.00099 20.4 0.9 1 23 409 433 409 433 0.96

7 8 0.024 1.6 10.3 3.7 1 23 439 463 439 463 0.95

8 8 0.00034 0.022 16.1 1.4 1 23 469 492 469 492 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.006	0.4	12.2	1.4	1	23	257	281	257	281	0.98
2	8	0.14	9.4	7.9	6.3	1	23	287	311	287	311	0.96
3	8	0.97	65	5.3	0.6	5	23	323	341	318	341	0.89
4	8	0.01	0.67	11.5	0.2	1	23	348	372	348	372	0.98
5	8	0.022	1.5	10.4	1.1	2	23	380	403	379	403	0.92
6	8	1.5e-05	0.00099	20.4	0.9	1	23	409	433	409	433	0.96
7	8	0.024	1.6	10.3	3.7	1	23	439	463	439	463	0.95
8	8	0.00034	0.022	16.1	1.4	1	23	469	492	469	492	0.97

Sequence Information

Coding Sequence: ATGACAAGCTCTTCTAATGAAAGCATAAGTGACGTTCCAGTATTTTTAAACGTTTCTTTAGTAACATCAGAAGATGGTAACTGTGCTTTCATTCCGGATACCATTTCGGAGCAGCCTGAGGATATCGTAGACTGGTTTGATAAAAATGACGAAGAAATGGTATTAAATAGTAACAGTAGTAAACCGGATCCGCTTTTAAATCAAGTCAATGCTAGAGATTCACCCACTTTGTTAAATTTCAGCGATGCCGATGTAGATCACCTCGGTGATTTGTGCATGAATATTTTGGATAATCCAGATACGGATTTCTTCGAACGTCCTAAACCTACTTCCTGCTCTTTGATTTCAAAAATCGATAAAAATATGAATTCCGTATCGAAAGAGAACAACCCAAATATAAGTGCCAAGTCGACTCCAAATAAGTGCGAATTGCTGGAAGGTATTATTATGTTGGGAGCATCGATGGAGGTAATTAAAggcaacaataaatttaaattaaagttacgAGACGAAAATTGTGTTGATGTATTTCCGACTCAGTACATTCAAACGAAGGAAACTGGTCATACTCAAGAAAGTATAGTTCGGCAAACGGTAAAATTGCTTGTAAGAACCAATTTCTGTACAGACTTAAAAGTTCAAATGCCTTGCTTGCATGGCGAGTTTGGTTTACGTGTTTGGTTGTGCCCTCACTCGGACTGTCTTCGAGCATTTTATCGTTTTAATTTAGCCAAATTACATGCTTTGAAGCATTTGGATCATAAACCGTACAAATGCACTTTTCCTAATTGTAAATGGGCATTTTATACCGCATTTAAGATGAGACGTCACGAAGAAACTCATTCCAAACGAAAAGATTTTGTTTGTTCCCACTCAAACTGTGACCGTCGTTTTACAACGATTTATAACTTAAATTGTCATCGTCGGCAGCACGATAAACCAGCTACAATTCCTTGTTTAGTGAAAGGCTGTGATAAATACTTTCAAACCATACACGCACGTGAAAGTCACTTGAAAGTTCACAGACAAGTAGAGGCTCCTTATCAGTGTCCCGTTCTCGAATGCAAGAAACAATTTTTCCTTTTTACGGCGTTAGCTACTCATGCACGTGTACATTCTTACAAGTTATCTGATTTGCGTTGCCAGTGGCCAAATTGTGGACGTATTTTCGAACAACCTTGTCGTTTAAAGCAGCACACTCTTCAACATACCGGTCAACGTCCGTTCATCTGCACATACAACGAGTGCAAATGGGCTTTTTCAACTGCAAGTAAATTAAAGCGCCATTTAAGTACTCACACCAACGAGCGAAAGTTTCATTGCACCATGGGCTCTTGCAACAAATCGTTTCTACGTCCGGAGCATTTACGAGAGCACACTTTAACTCACATCGGTCAACGTCCATTTCATTGTGAAGATTGTAGTGCAACTTTCAGTGGAAAATCTGCACTTTATTTGCACATTAAGAAAAATCATCCTAAATCGGAAAAAAGAAATGTAACGACTGTTCCTGTGGAAACAGAAAAGCCTACTTCCGATGATCTCTTAGAACAAGCAATACAAAGTCTCGATGTTCCATCGGATTTGATGTTGGGTAGTGGACTATTACCCGAAGAATTAttgaaaactgaaattttttcTACCGTCAATTTAAGAGATCTCGATTAA
Protein Sequence: MTSSSNESISDVPVFLNVSLVTSEDGNCAFIPDTISEQPEDIVDWFDKNDEEMVLNSNSSKPDPLLNQVNARDSPTLLNFSDADVDHLGDLCMNILDNPDTDFFERPKPTSCSLISKIDKNMNSVSKENNPNISAKSTPNKCELLEGIIMLGASMEVIKGNNKFKLKLRDENCVDVFPTQYIQTKETGHTQESIVRQTVKLLVRTNFCTDLKVQMPCLHGEFGLRVWLCPHSDCLRAFYRFNLAKLHALKHLDHKPYKCTFPNCKWAFYTAFKMRRHEETHSKRKDFVCSHSNCDRRFTTIYNLNCHRRQHDKPATIPCLVKGCDKYFQTIHARESHLKVHRQVEAPYQCPVLECKKQFFLFTALATHARVHSYKLSDLRCQWPNCGRIFEQPCRLKQHTLQHTGQRPFICTYNECKWAFSTASKLKRHLSTHTNERKFHCTMGSCNKSFLRPEHLREHTLTHIGQRPFHCEDCSATFSGKSALYLHIKKNHPKSEKRNVTTVPVETEKPTSDDLLEQAIQSLDVPSDLMLGSGLLPEELLKTEIFSTVNLRDLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293021;
90% Identity: iTF_01293021;
80% Identity: -