Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:66150806-66152512[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.12 8.2 8.1 0.0 2 23 77 98 76 98 0.95

2 12 2.7 1.8e+02 3.9 0.3 1 23 126 148 126 148 0.82

3 12 0.026 1.7 10.2 5.0 2 23 161 182 160 182 0.97

4 12 0.00012 0.0077 17.6 1.8 1 23 188 210 188 210 0.99

5 12 0.00013 0.0084 17.5 2.6 1 23 215 237 215 237 0.99

6 12 0.0013 0.088 14.3 0.2 2 23 241 262 240 262 0.97

7 12 0.4 26 6.5 0.3 3 23 373 393 371 393 0.91

8 12 0.28 18 7.0 0.4 1 23 418 440 418 440 0.98

9 12 6.2 4.2e+02 2.7 1.3 1 23 446 467 446 467 0.80

10 12 0.0014 0.095 14.2 1.0 1 23 473 495 473 495 0.98

11 12 0.032 2.1 9.9 2.7 1 23 500 522 500 522 0.98

12 12 0.0029 0.19 13.2 0.4 1 23 529 551 529 551 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.12	8.2	8.1	0.0	2	23	77	98	76	98	0.95
2	12	2.7	1.8e+02	3.9	0.3	1	23	126	148	126	148	0.82
3	12	0.026	1.7	10.2	5.0	2	23	161	182	160	182	0.97
4	12	0.00012	0.0077	17.6	1.8	1	23	188	210	188	210	0.99
5	12	0.00013	0.0084	17.5	2.6	1	23	215	237	215	237	0.99
6	12	0.0013	0.088	14.3	0.2	2	23	241	262	240	262	0.97
7	12	0.4	26	6.5	0.3	3	23	373	393	371	393	0.91
8	12	0.28	18	7.0	0.4	1	23	418	440	418	440	0.98
9	12	6.2	4.2e+02	2.7	1.3	1	23	446	467	446	467	0.80
10	12	0.0014	0.095	14.2	1.0	1	23	473	495	473	495	0.98
11	12	0.032	2.1	9.9	2.7	1	23	500	522	500	522	0.98
12	12	0.0029	0.19	13.2	0.4	1	23	529	551	529	551	0.98

Sequence Information

Coding Sequence: ATGGCGGACATGAAAAGCAAGCTGGAATATTTATATGGCTCCATCAAGATAAAAGTTGAGCCTTCGTTTAACGAGGTGAACTTCTCAGAAAATGGTAGTCAAGAAATTAAAACCGAGAAGATGGAGTACATGCAATTACATGATTCCATTGATATTAAAGATGAGAGTTTGGATGACGAATGTGAATCGGAACAAGATTTGGGTGACACCGAATCCTGCAACAAATCTGAATGTGGGGTATGTAAAATGATATTTCCTAATGATCAGCAACTTGCAGAACATGAAATTATGCACACCTCACCGGAACAGAGTTCAGGAAGTGTCGTTTATCCCAGTCAATTTTTTGTTACTGCATCACCGttgtacaattttatttacgCCTGTAAAATGTGTGACTATAAAACATTCGAAATGGAAAGTTTACCcttacatttagaaactcattcgAATGAAAATCAACTTTCGGGGCCAAAGGAGCtggaatgtgaaatttgtagttttaaatGTTGTCGTGAAGAAACTTTGAAGTATCATTTACGAAGCCATCCCCGCgagaaaccgtttaagtgtaatttttgcgattttaaatgtgctcaagaagaaaatttagaagttcatttaagaattcataCTGGCAAACAATTTGAATGTACGCTTTGTGATTATAAAGCTAAGAAAAAGACAAATTTGAAACTTCATCAGCGAACTCATGCTGTCAAAACATGTGGGGAGTGTAATGCAACATTTACTAATAGATTGGACCTTGAAGAGCATGAAAAAATTCACACCTTACCCAAACAGTTTTCATGTGCAATAATCGATCATAGCAGATTTTCTGTTATGGCATCACGATTGTACAAAGACCAAGTAAGATTGGTCTGTAAAATGTGCAACTTTGAAATGAACGAAATGAGATGTTTCCGGTATCAATTACAAACGTACTCGGAGGTGAAATTTCCAGAAAAATCGGTAAACAGTAGCCTGGAAACTACAACAAAAGATGTGGAAACGAAGCGGAAAGACCGGCACCACCGCATCGGTAACAAAGAGGAGGCTGCGGATAACGAATATCAACTGTACCAAGATTACGGAAGAAAAATACGCAAAAAGATCATTTGTGATGTATGTAACGCAACGTTTCATAACGATTTGGAACTTAAAGAACACACAGTACTTCACACCACCCCAAAACAGGTACTACCAGATAAACGTAAATTGTCCCTTCTGACATCAGCATCGTACGTTTATATTTACTCATGTAACGCGTGCGGTTACAAAACCCAAGAACAGGAAACGATAAACGatcatttaaaaagtcatttaggAAAAAATCGGTTTTTCTGTGACTATTGCGATTATGAAAGTATTCGAAATAATATCCATGCTCATTTGTTGACCCACGGGAAGAAGAAACCATTCGAGTGCAAATCATGCGGTTACAAATCTCCCAGGAGGAAAGACATGAAAGTTCATTTATTAACTCATCCTGAGACACaatttaattgtgaattttGTCTTTATAAAACTAACAAAAGGGCATCCTTGACTTCGCATTTACGTAAACATTCCGGCAAGAGCTTAATTTTTAAGTGCAACGTTTGCGATTTTGAAAGTTCTGTAAAGCAAACTTTGAAAGCTCATGTAATATCTCATCTCAACGAACAAGCATATAAGTATAAAATTTGCTGTAATAAATGTTTTACATAG
Protein Sequence: MADMKSKLEYLYGSIKIKVEPSFNEVNFSENGSQEIKTEKMEYMQLHDSIDIKDESLDDECESEQDLGDTESCNKSECGVCKMIFPNDQQLAEHEIMHTSPEQSSGSVVYPSQFFVTASPLYNFIYACKMCDYKTFEMESLPLHLETHSNENQLSGPKELECEICSFKCCREETLKYHLRSHPREKPFKCNFCDFKCAQEENLEVHLRIHTGKQFECTLCDYKAKKKTNLKLHQRTHAVKTCGECNATFTNRLDLEEHEKIHTLPKQFSCAIIDHSRFSVMASRLYKDQVRLVCKMCNFEMNEMRCFRYQLQTYSEVKFPEKSVNSSLETTTKDVETKRKDRHHRIGNKEEAADNEYQLYQDYGRKIRKKIICDVCNATFHNDLELKEHTVLHTTPKQVLPDKRKLSLLTSASYVYIYSCNACGYKTQEQETINDHLKSHLGKNRFFCDYCDYESIRNNIHAHLLTHGKKKPFECKSCGYKSPRRKDMKVHLLTHPETQFNCEFCLYKTNKRASLTSHLRKHSGKSLIFKCNVCDFESSVKQTLKAHVISHLNEQAYKYKICCNKCFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -