Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294040.1:42933204-42934268[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.13 8.8 8.0 2.2 1 23 112 135 112 135 0.97

2 7 0.082 5.4 8.6 0.2 3 23 143 162 141 162 0.94

3 7 0.0015 0.1 14.1 4.5 2 23 168 189 167 189 0.97

4 7 0.00012 0.0079 17.6 2.0 1 23 194 216 194 216 0.95

5 7 2.5e-06 0.00016 22.9 1.1 2 23 225 246 225 246 0.98

6 7 8e-07 5.3e-05 24.4 1.2 1 23 252 274 252 274 0.98

7 7 3.6e-05 0.0024 19.2 0.3 1 23 280 303 280 303 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.13	8.8	8.0	2.2	1	23	112	135	112	135	0.97
2	7	0.082	5.4	8.6	0.2	3	23	143	162	141	162	0.94
3	7	0.0015	0.1	14.1	4.5	2	23	168	189	167	189	0.97
4	7	0.00012	0.0079	17.6	2.0	1	23	194	216	194	216	0.95
5	7	2.5e-06	0.00016	22.9	1.1	2	23	225	246	225	246	0.98
6	7	8e-07	5.3e-05	24.4	1.2	1	23	252	274	252	274	0.98
7	7	3.6e-05	0.0024	19.2	0.3	1	23	280	303	280	303	0.96

Sequence Information

Coding Sequence: atggAATTTGAGTGCCGTACGTGCTTAAAAATATCCAACAACCTGTTGGATTTATTTTCCACTGATTTACCCATACAAATCGCGGTTATTTCTTCGGTGGAAATTGTGAAAAAAGAGAAATTTCCGTCAAAAATATGCGAAGAGTGTGCGAAGAACGTCCGCCTGCTCTACGATTTTCGTAGAACCATCGTGAAAAGTAACGAAGTTTTGGAGGACCGCTCTTCCAAAGGAGAAGAAGCTAATGTCATCATTAAGAGTGAAGTTCAAAACGAGGTAGTTCAAGGAGAAACTAAAATTTTGCCGGAATGTGAAAAGATCGAAGGTGGCCGGGTTTACAATTGCAGTTGGTGCGATTTTTCATCCAACTCTTACAAGTCGCAGTTCAATCACTATCGTTCGGTGCACACAGAGGTGTCCAAAGTTATTTGTGACGTTTGTGGTTTATTAGTTAGAAAGGACAATATGAAAAGACACAAAATGGTCCACTTAGATTCACCAGTTTCGTGTAATATTTGCAACAAAGTCTGCAAAAATAAAGAGATTCTAAGGCATCATGTTAGGAGGCACAGCACCGCAGAGTTTCTGTGTACAGAGTGCGGCAAAATTTTTGCTAATAGAACAAGCTACTACAACCACAAGAAGAGGCACAAACTCGGAGATGCTCGCACCGAAAAATGTTCCATGTGCCCCAAACGATTTTATGATAAAAGAACGCTGGCTGTGCATATTCGCACCCATACAGGCGAACGGCCCTATCCTTGTCAATATTGTAAGAAGGGATTTTCGAGCAGTAACGCCCTGAAAACACACATAAGACAGCACACAAACGAAAAACCGTATGTTTGTAATTTGTGCAGCACAGCCTTTCCCCAGAAGGTTTCCCTGACGACGCACATAAAAGCGAAACATTCAAGTTTAGTTTTACCTGTTTTGCAAAAAGAAACGAAAAAGTAA
Protein Sequence: MEFECRTCLKISNNLLDLFSTDLPIQIAVISSVEIVKKEKFPSKICEECAKNVRLLYDFRRTIVKSNEVLEDRSSKGEEANVIIKSEVQNEVVQGETKILPECEKIEGGRVYNCSWCDFSSNSYKSQFNHYRSVHTEVSKVICDVCGLLVRKDNMKRHKMVHLDSPVSCNICNKVCKNKEILRHHVRRHSTAEFLCTECGKIFANRTSYYNHKKRHKLGDARTEKCSMCPKRFYDKRTLAVHIRTHTGERPYPCQYCKKGFSSSNALKTHIRQHTNEKPYVCNLCSTAFPQKVSLTTHIKAKHSSLVLPVLQKETKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292973;
90% Identity: -
80% Identity: -