Rlut017136.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:49904872-49913556[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.6 5.7e+02 2.3 3.4 1 23 539 562 539 562 0.81 2 11 0.00038 0.025 16.0 0.7 3 23 569 588 567 588 0.95 3 11 0.00095 0.063 14.7 2.3 1 21 594 614 594 616 0.93 4 11 0.00043 0.029 15.8 0.1 1 21 622 642 622 643 0.93 5 11 0.066 4.4 8.9 1.5 2 23 650 671 649 671 0.96 6 11 0.017 1.1 10.8 1.0 2 23 687 708 686 708 0.96 7 11 0.0087 0.58 11.7 0.5 1 23 715 737 715 737 0.86 8 11 4.8e-06 0.00032 21.9 0.6 1 23 743 765 743 765 0.98 9 11 8.5e-06 0.00057 21.2 5.9 1 23 771 793 771 793 0.99 10 11 1.6e-05 0.0011 20.3 0.7 1 23 799 821 799 821 0.95 11 11 0.016 1 10.9 2.1 1 23 827 850 827 850 0.96
Sequence Information
- Coding Sequence
- ATGTTGAGTGTTGATGAATTCTTTCTAAACGACAACGAATTAAATCCAAATGTGAATCATATCGTTTCAACTTTTTTGCTATCAGATGCAAGTACGGAAGTAACTGAAATCGATCCCGACAAAACATGTCGTTTATGTTTAAGAACTTACGAACCTGGTAATTTGATGGAATTCTTTAACAGTGTCCTCGAAGGCCAAGATACATCGATGTCTTCAATTTTATCAACCTGTTTCAAAATTGAGtTCCATAAAAATACACATTTGCCTAATGTTCTGTGCACCAGTTGTGCTTCTACCATAATGGTAGTGCATAGTTTTCTTGAGTGTATTGAAACtagcgaaaatattttaaaaaaccaTCTAGAAATAAAATCTAGTGAATTAGATAATTCTAACGAGGTTTTACATAATCATTTTCTTGGTCACGATTACGTCACAGAACCTAACATCGGATCGGAAGGAAATAATCCGCCAGAAGAAATCAAACGTAATGAATCGGATAATTCTTGCGAAGTTTTACACAATCATGTGCTTAATCACGATTACGTCACAGAACCAAAACGTCAGAGGAATAAAAAGCaaacaaaagtacctaaaaaaattgcaaaagagAAAACAGGATCGAATCATTCTTGTGAGGTTTTACGTAATCATTTGGTTGATCACGATTACATCAAAGAACCTAACATCGTATCGGAAGGAAATAATCCACCAGAAGCAGTCAAACCTAGTAAATCGGATCATTCTTGTGAGGTTCTACATAATCATTTGGTTGACAACGATTACATCAAAGAACCTAACATCGTATTGGAAGGAAATAATCCACCAATAGAAATCAAACATAGTGAATCGGATAATTCTTGCGAAGTTTCACACAATCATATGCTTAATCACGATTACGTCAAAGAACCTAAACGTCAGAGGAATAAAAAGCAAACAAAGGTacctaaaaaaattgcaaaagagAAAACAGGATCGGATCATTCTTGTGAGGTTCTACATAATCATTTGGTTGACCACGATTACATCAAAGAACCTAACATCATACTGGAAGGAAATAATCCACCAAAAGAAGTCAAACCTAGTGAATCGGATAATTCTTGCGAAGTTTCACACAATCATTTGCTTAATTACGATTACGTCACAGAACCTAAACGTCAAAGGAATAAAAAGCAAACAAAGCTacctaaaaaaattgcaagaaaGAAACCAGGATCGGATCATTCTTGCGAGGTTTTACATAATCATTGGGTTGTTCATGATTACATCAAAGAACCTAACTTCGTATCGGAAGGAAGTAATCCACCAGAAGCAGTCAAACCTAGTAAATCGGATCATTCTTGTGCGGTTCTACATAATCATATGCTTGATCACGATTACGTCAAAAAACCTAAACGTCAGAGGAATAAAAAGCAAACAAAGGTacctaaaaaaattgcaaagaaGAAAACAGGATCGGATCATTCTGGCGAGGTTTTACATAATCGTTTGGTTGATCACGATTACATCAAAGAACCTAAACCCCAGAGAAATAGAAAGCAAACAAAAGTACCAAAACAAACTGAAAAAGTGAAAACAGTTACACCGTGGTGGTCCCGAACAAAGAAACCCCCTTATATCTGCAAGATTTGTGGATTTAACTATGGAGTTGattataaaaagtttttcaaacatGTTCGAACACATGTGATGGCAAAGCTGGCTTGTGAATATTGCGGAAAGAGATTTTCTAGTCAGAGATTGCAAGTACACTTGAGAAGCCATACCCAAGAAAAACGATTTCTTTGTACTAAATGTCCTGCACGATTTAATGTATCAGCAAACTTGACACGTCACATGAGATGCCACACCAGAGAAAAATTGCATGTTTGTGAAATTTGCGGTAAAGaatttaaaTCGAAAGGTGGACTTGGTTTACATCTGAAGTTACGTTCTGAGCGGGATACCTCATGCAAAATTTGTTGTAAGAACCTTTCTAATGCTTTTAATCTTCGGGTTCACATACTATGGCATGAACTGCAAGAAAGAGAAAGTGTTTTGGACGACATGGAAGAATGGATGTGTGATTTATGTGATATGGAATGTAACAGCTTTAAAAGCttaaatttgcacattttgaCCCATGTGGATAATCGGAAAGCTTACACCTGCACTATCTGCGATAAGGTTTTTACTGCTAGACGTTCACATGCCGCACATCTCCTAGCTCATAAAGgTCAATTGCCGTATTCGTGtgatatttgtttgaaaacgtTTATAACTCCTTCAGTATTACAGAGACACTACAGAATGCATACTGGCGAGAAGCCCTACAAGTGTGAAGTCTGTTCAAAATGTTTTACTCAACGGCAACATTTAAAAATCCATATGGTTACACATACAGGTGAAAAGAAGTTCCTGTGCCAATATTGTGGAAAAGGGTTTACAGCTAAAAGTAGTTTGATCGTACACAAACGAAGTCATACTGGTGAAACTCCGTATGTTTGTGAATGGTGTCAAAAAGGTTTCCATGAAATAAAGACTTTCAAGAGGCATATTAAAGCAAAACATCCGAATGATTGa
- Protein Sequence
- MLSVDEFFLNDNELNPNVNHIVSTFLLSDASTEVTEIDPDKTCRLCLRTYEPGNLMEFFNSVLEGQDTSMSSILSTCFKIEFHKNTHLPNVLCTSCASTIMVVHSFLECIETSENILKNHLEIKSSELDNSNEVLHNHFLGHDYVTEPNIGSEGNNPPEEIKRNESDNSCEVLHNHVLNHDYVTEPKRQRNKKQTKVPKKIAKEKTGSNHSCEVLRNHLVDHDYIKEPNIVSEGNNPPEAVKPSKSDHSCEVLHNHLVDNDYIKEPNIVLEGNNPPIEIKHSESDNSCEVSHNHMLNHDYVKEPKRQRNKKQTKVPKKIAKEKTGSDHSCEVLHNHLVDHDYIKEPNIILEGNNPPKEVKPSESDNSCEVSHNHLLNYDYVTEPKRQRNKKQTKLPKKIARKKPGSDHSCEVLHNHWVVHDYIKEPNFVSEGSNPPEAVKPSKSDHSCAVLHNHMLDHDYVKKPKRQRNKKQTKVPKKIAKKKTGSDHSGEVLHNRLVDHDYIKEPKPQRNRKQTKVPKQTEKVKTVTPWWSRTKKPPYICKICGFNYGVDYKKFFKHVRTHVMAKLACEYCGKRFSSQRLQVHLRSHTQEKRFLCTKCPARFNVSANLTRHMRCHTREKLHVCEICGKEFKSKGGLGLHLKLRSERDTSCKICCKNLSNAFNLRVHILWHELQERESVLDDMEEWMCDLCDMECNSFKSLNLHILTHVDNRKAYTCTICDKVFTARRSHAAHLLAHKGQLPYSCDICLKTFITPSVLQRHYRMHTGEKPYKCEVCSKCFTQRQHLKIHMVTHTGEKKFLCQYCGKGFTAKSSLIVHKRSHTGETPYVCEWCQKGFHEIKTFKRHIKAKHPND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -