Rlut030406.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- prdm10_2
- Assembly
- GCA_958510855.1
- Location
- OY294041.1:40201406-40217045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.37 25 6.6 0.2 2 23 462 485 461 485 0.96 2 11 0.00014 0.0091 17.4 0.3 1 23 502 524 502 524 0.97 3 11 0.0027 0.18 13.3 2.4 1 23 549 571 549 571 0.97 4 11 0.0084 0.56 11.7 3.2 1 23 579 601 579 601 0.98 5 11 0.0034 0.23 13.0 2.4 1 23 608 630 608 630 0.98 6 11 0.00056 0.037 15.4 1.2 1 23 636 659 636 659 0.96 7 11 0.00021 0.014 16.8 2.4 1 23 664 686 664 686 0.95 8 11 4.1e-05 0.0028 19.0 1.0 1 23 692 715 692 715 0.94 9 11 0.021 1.4 10.5 1.6 1 23 756 779 756 779 0.97 10 11 0.00054 0.036 15.5 2.3 1 23 801 824 801 824 0.97 11 11 0.013 0.88 11.1 3.4 3 23 864 885 864 885 0.98
Sequence Information
- Coding Sequence
- ATGGACGTGGTACCCTTCGAAAGTGGAAGTACTGCAGtgtcaaattttaatcaaaacgtTTCGTGGAAGAACGTCGCCAATGCGGCAAACCCCACTTTCGTTTTCATAGCCGTCGAATGTGTGAAGGATGAAAACGACTTTAAGTTTGGATCCGAGATCAATTTTAGAGATGCAGGAGACTTTGAGCACGTCAGTCctttggatcccaatatgggcTCGACGGCACGCTACAGTCCCACTTATGTGGAGTCCGACATCGCCTACAGTAATTCGGTCGTCGTACAACAGTTAATATCCAGTAATTCGGAAGATAGACAGCTAATGATCCAAAATCGCGATTCACTCGTTCCTAATTTAAATGGAACCAACTTTGAAGGACTGGAGAGCTCTTTGAGTGCGGCTGATGCTAACCTCTTCAAGCAGGTCATCTCAAATCGGTACCTGCTAAATAGGCCAGCAAATGAAGACCCAGAAGCCAACGTTTTACACCTGGTTCCTGATCCAACCACCGAAGAGGAAGTCCAGTTGATGATTACCGATCAAGCCACAGGAGTCTCCTACAATGTGAGCACTCAAGAATACCTAGTGGAGAGGTGCCTGTCGGATGAACAACAACTTTTGGATTCGTTAGAACCAGACTCCTTGTTAAATTCTGCAGATCTTCTAACTCTGGACGATTCCACCCTCAAGTCACAGTTATCCGACATAGCAGACGCTTCCAATTGTAACATTTCCGATGTCCTCATCAAAATTGAAGAATGTGAGGATATTAAATCGGAGAATATGATAGGACTGCAAAGTTCAGTACCAGACGTTAGAATAATTGCAGATCAACCGGTGAAGTCACGAGCCAGGGCTTCACTACCCACTTCACATTTAGCCATTGTGGAGAAGGATAAAGAATGTCGCGTTTTCGCACGCAAATTGATACCAAAGAAAACCAGATTTGGACCCATGGAGGGCGTCTTGATGGTAAATAGTGATAAAGATGAAactaattgtttaaaattgctGCTGGATTTACAAGATGGAATTACACATCGGTTGGAAGTCTCAGATGAAAatgtTGCAAATTGGATGCGATTTGTTAGAAAGGCTGAAAATTATTTGGAACAAAATCTTTTGTTAACGCAACACAACAATGGTTTATATTTTACTGCCACTGTTAACATTCATCCCAAGCAGGAACTTCTGGTTGGATATTGCGCCGAGTATGCCAGAAAGCACAACCTCGTTTTCTTCTCGCCCATTAAGGAGCCTTTACCCCCGTTAAACAATTTCATTAAATGTGACGACAAGAACACTCccgaaaaagaagaaaaaattcttaaattaaaagatGATCAAGTAAAACATGAGAAAAAATTTGATACCATAGTCTtggaatgtaaaatttgtaatggGGTGATTTCTTGTTCGGATGTTGAACTGTTAACCAGGCATCTTGCCATGCATGGAATTGACTCGCCCACTTCATTGGAAGATAATTTTACAATTGTTgaTTTTGTATGCAATAAGTGCGACGAGACGTTTGCGACAGAAGCACTTCTAAAAGTCCACAATCAACGTCATAAAGTCAACATTAGCGAAACAAAGGATAAAAATCGACgaagcaataaaaattggaaactCAAAGGAGGTGGACACAAATGTCCTGTCTGTCACAAGGTGTTTGCATCTTTAGAACGAATTCAAAAACACACTTCGGTGCATGGACCAGAAGAATCAAAACCTTATAAGTGCGATACGTGCgggaaacgatttttaaatAACTCCGCTTTGACGTGCCACGTTAAAACTCACAACAAAGACAAAAAGATGTTTGAGTGTCCCATGTGCAAGGAATCCTTTGATCACGTGTTACATCTCAAAGTTCACGTTTCAAAGCATCGCGAAGATGGAAAGTACATCTGCCCACACTgcgataaaatatttaaagagtACAGCGTGATTCGAAAACACATTAGGGCCTTTCATTGCGATAGGAAGCACAATTGCCCGCATTGCGGTAAACCTTTTCCCACGTTGGATAAACTTCGCATGCACTCGTTGCGGCACTCCGATCATAGAGAATTTTTGTGTGCCGATTGCGGTAAGCAATTCAAACGAAAGGACAAACTAAAGGAACATGCTAAGCGTGTGCACGCGGACGAACGGGAAAATACCATGCCAAAGCATGCAAAGATTAACGTACGCAAtaataacaacaacaacaacaaaaaattcatGCCTAAAGTTCAACCCACTGATTACCACCGTTTTATCTACAAATGCCACTCCTGTTTGGTAGGTTTCAAGCGTCGCGGGATGCTTGTAAATCATTTAGCGAAACGTCATCCAGATATAAGCCTCGATTCGGTCCCCGAATTGAACTTACCTATTTTGCGCACTACACGCGATTATTATTGCCAATATTGcgataaaatttacaaaagcaGTTCGAAACGTAAAGCGCACATCCTTAAAAACCATCCAGGTCAAGCTTTACCCATGAGTAATCGAAAACGGGGCTCCTTACCGGAAGTTTCGGGACTACCAAACCCAACATTTTCGCAAACCGTTGGAAGCATTACTACACGACCTCAAGGTTGTCAGTGGTGCCATAAGCAGTACGCAAGTAAGGCAAAGCTGCTGCAACATCAACGGAAGAAGCATTCCAATTTTCTTCAGTCCCAGTCGCGTAATAACGAAAATATGAAACAAGAAATGAATCCACCTGCAAGCCAAGAAAAAATGCCGGAAGTGGTGGTTGATTCACGCTCGGCAAAGAGAGACTTCCAGgtgtCTGATGATTTCTTAGCCGAAGTTATAACTTTGAGCGGCGATGAGCAGTACTATAGAATTATGTCGGTGCCGTCTAGTAATTCAATAATGAACTTAAACCAATCATCAGATCTTAACCGCGCACCCGACTCTAGATTATACCATTTGTTAACGACCGGAAGTGaaaactTGGAGAAAGCCGATCCCCTAAAGTCGTTCATCGATGACGAAGGTTCTGGATTATTGGAAGCAGCACTTTTTCTGTttaatgatgatgatgataatacTAAGATTAAAATTGATGCTGTCTTACGTTACATTGTTAAtcacaaaaatttcaaacttcGTGAAGATAACATAGTAATAGCGAGCACAAGAAGCGAAtatgtgtttttcaaaattgtacaaCTGGGCGGTAATGTACACCACATATTTAAATCTAGTACTACTGTTTTACAAAAAGCACAATctattaatattgtaaaatatgcGTTACAAGAAGGGGTAGATGTTAATTATTGCAATAGTGAAGGCTGTAATAGACTGCATTTTGCTTGTATGCAAAATTCTTTAGATATTATTGAACTGTTACTTCAGAATGAGTTGCTAGATTTATATCTTCCTGGTAGGTGGTCGAAAACACCCATCGAACTTGCAATTTTTCATGGACACTTCGATGCAGCTTCCTTAATCCTTAATTCAAAATTGGCTGACAATTTAACATTCGGTTTATTATACGATCTGTTTAGTTGTTTGTGTAAATTCGGTGTTAACAATTCCCATACAATATGGTTTCAGTTCAACGACGAAACAGAACCAAGAAAAAACGCAAGTCCTAATGTTTTCGAATTACTTTGGAAAAAATTAGTTGAAAGTTATAGATTATTAAGTAATACTACAAAAGAGCCGCCGGTTTTATcgatatatttaaataacagcaGTTTCGTATCAAAAATTTGGAGTAACtcattgaaaataatattgacATCGGAAATTGCACACCAACTGTTAGAAGAATGTATTACCTACgaaaagaagaatatttttactttgttgATTCCAAAATTGATTGAAGCCGGTGTTGAACAGGAGGATAGAATCCAAGTTCTAGAATTGATATTATCTATGGGTTTCACACCTAATTTACAAGACATGGCtgatacattattttatttgaaatttaatgaagAGTTCCAACTTCTAAGTCAGTATCTTCCTGACGATTGCCTGGTTAATGACGTGATTAATGGCCTTCGCCATGACGAAGGAAACCTCATGCTCTACTTAGCAATTATATTTTGCGGATTGGAAGACAATTTAGATTACAAGAAGATATTTAGTGAAGAACTTCCTCCAAGTTGTTACGATTTTGTAATGCAATATTTTAGTCCCACTTTGTCAAACTGTTGTTTCAAACCCAACTACGATGATGATGATGGTTTCGTAAGCATACctaaaattttgtcattgaaGGAAGTAAGTAGGAACTCAGTTCgaaaattcataaaaaacaaGAATGAAGTAAGGTCCCCAAAATGCTTTATTTCGGCTGTGCTTTCTCTGAAAACttcgtataaaatcaaaaatttcattatgttAAAAGCATCGCTCAATGAATTATAa
- Protein Sequence
- MDVVPFESGSTAVSNFNQNVSWKNVANAANPTFVFIAVECVKDENDFKFGSEINFRDAGDFEHVSPLDPNMGSTARYSPTYVESDIAYSNSVVVQQLISSNSEDRQLMIQNRDSLVPNLNGTNFEGLESSLSAADANLFKQVISNRYLLNRPANEDPEANVLHLVPDPTTEEEVQLMITDQATGVSYNVSTQEYLVERCLSDEQQLLDSLEPDSLLNSADLLTLDDSTLKSQLSDIADASNCNISDVLIKIEECEDIKSENMIGLQSSVPDVRIIADQPVKSRARASLPTSHLAIVEKDKECRVFARKLIPKKTRFGPMEGVLMVNSDKDETNCLKLLLDLQDGITHRLEVSDENVANWMRFVRKAENYLEQNLLLTQHNNGLYFTATVNIHPKQELLVGYCAEYARKHNLVFFSPIKEPLPPLNNFIKCDDKNTPEKEEKILKLKDDQVKHEKKFDTIVLECKICNGVISCSDVELLTRHLAMHGIDSPTSLEDNFTIVDFVCNKCDETFATEALLKVHNQRHKVNISETKDKNRRSNKNWKLKGGGHKCPVCHKVFASLERIQKHTSVHGPEESKPYKCDTCGKRFLNNSALTCHVKTHNKDKKMFECPMCKESFDHVLHLKVHVSKHREDGKYICPHCDKIFKEYSVIRKHIRAFHCDRKHNCPHCGKPFPTLDKLRMHSLRHSDHREFLCADCGKQFKRKDKLKEHAKRVHADERENTMPKHAKINVRNNNNNNNKKFMPKVQPTDYHRFIYKCHSCLVGFKRRGMLVNHLAKRHPDISLDSVPELNLPILRTTRDYYCQYCDKIYKSSSKRKAHILKNHPGQALPMSNRKRGSLPEVSGLPNPTFSQTVGSITTRPQGCQWCHKQYASKAKLLQHQRKKHSNFLQSQSRNNENMKQEMNPPASQEKMPEVVVDSRSAKRDFQVSDDFLAEVITLSGDEQYYRIMSVPSSNSIMNLNQSSDLNRAPDSRLYHLLTTGSENLEKADPLKSFIDDEGSGLLEAALFLFNDDDDNTKIKIDAVLRYIVNHKNFKLREDNIVIASTRSEYVFFKIVQLGGNVHHIFKSSTTVLQKAQSINIVKYALQEGVDVNYCNSEGCNRLHFACMQNSLDIIELLLQNELLDLYLPGRWSKTPIELAIFHGHFDAASLILNSKLADNLTFGLLYDLFSCLCKFGVNNSHTIWFQFNDETEPRKNASPNVFELLWKKLVESYRLLSNTTKEPPVLSIYLNNSSFVSKIWSNSLKIILTSEIAHQLLEECITYEKKNIFTLLIPKLIEAGVEQEDRIQVLELILSMGFTPNLQDMADTLFYLKFNEEFQLLSQYLPDDCLVNDVINGLRHDEGNLMLYLAIIFCGLEDNLDYKKIFSEELPPSCYDFVMQYFSPTLSNCCFKPNYDDDDGFVSIPKILSLKEVSRNSVRKFIKNKNEVRSPKCFISAVLSLKTSYKIKNFIMLKASLNEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -