Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294039.1:14679751-14681971[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.3e-05 0.0029 18.9 1.7 1 23 355 378 355 378 0.95

2 7 0.0039 0.26 12.8 0.3 1 23 384 406 384 406 0.97

3 7 1.7e-08 1.1e-06 29.7 2.5 1 23 410 432 410 432 0.99

4 7 3.4e-06 0.00023 22.4 0.9 1 23 438 462 438 462 0.97

5 7 4.9e-06 0.00032 21.9 0.8 1 23 468 490 468 490 0.95

6 7 0.0001 0.0068 17.8 0.6 1 23 496 518 496 518 0.98

7 7 0.12 8.1 8.1 3.8 1 21 521 541 521 542 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.3e-05	0.0029	18.9	1.7	1	23	355	378	355	378	0.95
2	7	0.0039	0.26	12.8	0.3	1	23	384	406	384	406	0.97
3	7	1.7e-08	1.1e-06	29.7	2.5	1	23	410	432	410	432	0.99
4	7	3.4e-06	0.00023	22.4	0.9	1	23	438	462	438	462	0.97
5	7	4.9e-06	0.00032	21.9	0.8	1	23	468	490	468	490	0.95
6	7	0.0001	0.0068	17.8	0.6	1	23	496	518	496	518	0.98
7	7	0.12	8.1	8.1	3.8	1	21	521	541	521	542	0.95

Sequence Information

Coding Sequence: ATGTTGTGGACCCCGAATATTTGCAGAATTTGTGCCCAAATATCTAATATTTGCATTCCCATATTTGAAAAAGATTCCCCTACTGGAATCGATTCAAAAATTAGGCGATGTTTGTCACCAAacATTTCGCGAGATGATATGAAACCAAAGCAAGCATGTGAAGAGTGTGTTGCCAAATTAAACGATTTCTGTAACTTCGTGGCTTTATTTCACGAATCAAATTATCGATTCGAAACTTTGTTGTATCCACCGGAAAATGATCTTGCAACCGCAGAGTACGTCGACTTAGATCTTTCGTTGACACCAAAACCTTctgatttaaataatataaacggTTACAAAGAAGAAGATATGATGCCATTAGAGAATTTAGACGTTCGTGATTTCAACGAACAGAATATTATCAACGAAATTGTCAAACAAACTGACGTGGGTATCGAAATGACAAGTTTTACCCCTAACGAAAACAATATTCTGGATGATATTACGTCTAATAATCATAATCTGGAAAAAATTACATCGTACCTCGATTTAGAAAGCATTGCCGGGAATGATGGCAGCTTCATTAAACTGGATCGACAGGTACCAAGTTACCAAGAAATTGGAGCTTGTGGCGGAAGTTTTAAGAAAAAGAATTTGATTTCGGTACAAGAAATATGTAAAGAAGTCGAAAGACAACAAAAAATTGATGTTGGTGACAACAgtggaattaaattgaaattttatcgtAACCGAAGAATTAAAAATTCGCGCATTTGCAGTAAAACGGTAAAACCGCCAGAAAATGTAGAAGAGGAAGAAGTTTTGTTCAATGATATCTTAAACGAAGTGAATTTAGATGTGCAGAACTTTGTGTCTCATAATGATTCGGCTATTTTGAAACCGAATAATCACAGTTTGGAGAATTCGTTTGCTTCTAATtttgaATCCGTCACATCTAATGAGATAACAACGAAGAAAAAATGCAAGTTCAACGTAATCTCCGTGAACACGATACGAAAAGTCAACGAAAAACCATCGTCGCTCACAGATCCTAAGAACAAAAAAGACGCCGCCAATCGTTACGAATGCAAAGAATGTGGAAAGTCGCTAAGTCGTCGAAAATATTTGAACGAACACTACGTGAAAAAGCACGACAAAGTTAGACCCTACGTTTGTGAAACTTGCAACAAAACCTTTGCCATCCAATGGGATTTAATTTTCCACAAGAGAATTCATACAAGTTTGTACTCCTGCACATACTGCAACAAAAGTTTTAGTTCGCCCAGTAAGTTACAAAGGCACGTACGAACTCACACTGGTGAACGGCCGTTCGTTTGTTCCTTCAAAGATTGCGGACGTTCTTTTTCGGATAAACGCAACTTGATGGGACATCAATTGACGCACACGAATATTAGACGATTTACGTGCGGAATTTGTAAACGATCGTACAAAACTAACAGTCAATTGAAGGATCACATGGGGGCGCATAGTGATGTGCCCGCGTTTTCGTGCGACATTTGCACTAAGGCGTATCGTTGGAAAACTAACTTGGTGATCCACATGAAAACGCATAATGGTTTTCACTGCTCGAATTGCGGAAAGGATTGTGGAAAACGGTCTCTCTTCGTAAAACATAGAAAAGAATGCCCTGCAAGCGTTTCGTGA
Protein Sequence: MLWTPNICRICAQISNICIPIFEKDSPTGIDSKIRRCLSPNISRDDMKPKQACEECVAKLNDFCNFVALFHESNYRFETLLYPPENDLATAEYVDLDLSLTPKPSDLNNINGYKEEDMMPLENLDVRDFNEQNIINEIVKQTDVGIEMTSFTPNENNILDDITSNNHNLEKITSYLDLESIAGNDGSFIKLDRQVPSYQEIGACGGSFKKKNLISVQEICKEVERQQKIDVGDNSGIKLKFYRNRRIKNSRICSKTVKPPENVEEEEVLFNDILNEVNLDVQNFVSHNDSAILKPNNHSLENSFASNFESVTSNEITTKKKCKFNVISVNTIRKVNEKPSSLTDPKNKKDAANRYECKECGKSLSRRKYLNEHYVKKHDKVRPYVCETCNKTFAIQWDLIFHKRIHTSLYSCTYCNKSFSSPSKLQRHVRTHTGERPFVCSFKDCGRSFSDKRNLMGHQLTHTNIRRFTCGICKRSYKTNSQLKDHMGAHSDVPAFSCDICTKAYRWKTNLVIHMKTHNGFHCSNCGKDCGKRSLFVKHRKECPASVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271824;
90% Identity: iTF_01292615;
80% Identity: -