Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:36297454-36298380[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.8e-05 0.0065 17.8 1.0 3 23 90 110 88 110 0.96

2 8 8.5e-05 0.0057 18.0 1.9 3 23 118 139 116 139 0.96

3 8 0.00021 0.014 16.8 0.3 1 23 145 167 145 167 0.97

4 8 4e-06 0.00026 22.2 2.0 1 23 173 195 173 195 0.98

5 8 4.4e-06 0.00029 22.1 2.3 1 23 201 223 201 223 0.97

6 8 0.00041 0.027 15.9 7.4 1 23 229 251 229 251 0.98

7 8 0.011 0.73 11.4 1.9 1 23 257 280 257 280 0.97

8 8 2.3e-05 0.0015 19.8 2.7 1 23 286 308 286 308 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.8e-05	0.0065	17.8	1.0	3	23	90	110	88	110	0.96
2	8	8.5e-05	0.0057	18.0	1.9	3	23	118	139	116	139	0.96
3	8	0.00021	0.014	16.8	0.3	1	23	145	167	145	167	0.97
4	8	4e-06	0.00026	22.2	2.0	1	23	173	195	173	195	0.98
5	8	4.4e-06	0.00029	22.1	2.3	1	23	201	223	201	223	0.97
6	8	0.00041	0.027	15.9	7.4	1	23	229	251	229	251	0.98
7	8	0.011	0.73	11.4	1.9	1	23	257	280	257	280	0.97
8	8	2.3e-05	0.0015	19.8	2.7	1	23	286	308	286	308	0.99

Sequence Information

Coding Sequence: ATGGATCAAGAAGTACTTCTTTTTGAAGAGTtccaaaatttagaaaaagattGCGATGATTTACAAGTAATTAAAAAGGAAGAACCAGACGATACGGAAATTAATTTGGAAGACTTGCATCACACAGTTGAAATCAAAGAAGAGATAAGACCCTTTCTGGAATTCCAAACGGACGAAGACAGTGAAGTACAAAAAATGGAATGTACGATCAAATTCGATAACAAAAACTTGCAGCTGGGAAAGCTTTCTCCAGAAAAACCATTGGCGTGCGACTTATGTGAATATAAAGGTTCAAACAAACGCAATTTTAAACGGCACATGAGaattcatacaggcgaaaaaccgtttggaTGTGAAGTTTGTGATTATAGATGTTCAGATAAGTATGACTTGAAGCGACATGTCATGAGAACCCATGCGGGTGTGAAACCATTCGCATGTAATATCTGCAGCTATAAATTTGCAATCAAGCGTGATTTGATACGGCATTTAGGAACCCATGCTGTTGAGAAACCATTTGCTTGCAATGTATGTGACTATAGTTCTTCAAGAAAGCATCAGTTGGTATTGCATATGAGAACCCATACcggagagaaaccgtttgacTGCAAAGTTTGTGATCATAGATTTTCGTCCAAACAACAATTGGTATTGCATATGCGAATCCATACCGGAGAAAAGCCATTTTCGTGTAAAATGTGTGACTTTAAATGTTCACAAAAAGGACATTTGAAATATCATGTACGAACTCATACGGGAGAAAAACCATTTTCGTGTGAGATGTGCGAATTTAAATGTTCAATCAGAGGACAACTCAATTCCCATATTTTGAGAAATCATACTGGAGATAAAtcgttcaaatgtgaaatttgtgactttaaatctGCATTTCCACATGATTTAAGGCGGCATCAAAGaactcattaa
Protein Sequence: MDQEVLLFEEFQNLEKDCDDLQVIKKEEPDDTEINLEDLHHTVEIKEEIRPFLEFQTDEDSEVQKMECTIKFDNKNLQLGKLSPEKPLACDLCEYKGSNKRNFKRHMRIHTGEKPFGCEVCDYRCSDKYDLKRHVMRTHAGVKPFACNICSYKFAIKRDLIRHLGTHAVEKPFACNVCDYSSSRKHQLVLHMRTHTGEKPFDCKVCDHRFSSKQQLVLHMRIHTGEKPFSCKMCDFKCSQKGHLKYHVRTHTGEKPFSCEMCEFKCSIRGQLNSHILRNHTGDKSFKCEICDFKSAFPHDLRRHQRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292725;
90% Identity: iTF_01292725;
80% Identity: -