Rlut004914.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294036.1:66242174-66243999[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.091 6 8.5 2.5 1 23 134 157 134 157 0.94 2 13 0.036 2.4 9.7 0.2 3 21 231 249 229 250 0.93 3 13 0.46 30 6.3 0.4 5 23 266 284 263 284 0.91 4 13 2 1.3e+02 4.3 1.2 3 23 303 324 301 324 0.90 5 13 0.57 38 6.0 0.4 2 19 331 348 330 350 0.94 6 13 0.061 4.1 9.0 0.1 1 19 364 382 364 386 0.95 7 13 0.00036 0.024 16.1 3.5 1 23 391 413 391 413 0.98 8 13 2e-05 0.0014 20.0 0.4 1 23 419 442 419 442 0.96 9 13 1.7e-05 0.0011 20.3 1.0 1 23 448 470 448 470 0.98 10 13 1.7e-05 0.0011 20.2 0.5 1 23 476 498 476 498 0.99 11 13 0.00026 0.017 16.5 7.1 1 23 504 528 504 528 0.99 12 13 0.00077 0.051 15.0 3.0 1 23 534 556 534 556 0.98 13 13 8e-05 0.0054 18.1 5.7 1 23 562 584 562 584 0.96
Sequence Information
- Coding Sequence
- atggaaatttttctAGAAATACCGAAAGATATCAATAAAGTGTGTAGGGCTTGTCTCAATGTTACAGAAGGAAATgacaaaatgtttaattatcAACTTATATGTGATAATCAATTGACGAGTATATCTTCATTTTTCGAAAACGTGACATCTTTAAAGGTTGCAGTTGGTGATGGTTTACCGGAGTCAATTTGCAGTGACTGCTACGAGTCGTTAGAAAATGCCTATACTTACAGGAACCGTTGTCAGTATtcagaagaaaaattaaaagtgcTTTTAGAAAGGTGTACTACAAACATAGAGATAGAAGAGAATTCAGACACCAAGGAATTAATCGAAAGTGACATAAACGATACTGTAACTGATGTCACGAGTCCTTTAAAGCAGGAATATTCACCTTATAATTGTCAGCATTGCAACTCAAATTTTTTGTCAAATTATCAATTAAGCAAGCATATTATTGAACAACACAATACCACCAAGACAATTTCAGAAAGGTTTTTAGAAAATTCTAATGAAGAATTTGAAGAAACTGATATTCATTTGAGTGGAGTGAACatgttaaaatgtattttaagaCGTAAGCGAATTAATGAAAATCTTAACGATACAATCGAATTGATGGAGGATGATATAAACATGGAAGATTCAAAAGACGGTTATGATGAAATAAATAGAACAGATATTGATTGTAAGATATGCCGGCAAATATATCCTACATTAGAAGATCTAAATCAGCACTTGTGTGAACCTACCGATACCAAAACaagtgaaatattttataaatcgtgcatattatgttataaattattttcagatGCAAGTGCTTTatctttacattttttaaaacatgCTTTCATTATACAATGTACGAAAACTGTGAATATCCAATCCgaatttttgttttgtgaaGTTTGTGGTGAATTGTTCAATTGTCAGCAAAATTTAGATCAGCATTATGACAACCAACATGAAGGCAAAAGGTTATGGACTTGTAACGAATGTTGTACTACATTTATCACCGAAATGGAATTAATTAAACATAACTTGCATAATTGTTCATTAACTCCGATTACATTTGACACAAACTTTCCATGTGTTTTGTGCACCGAAATATTTCCATCCAAAGAAGAATTACTCAATCATTCCCCTATACATCTGATGAAAAAATACTCGTGTAAGAAATGTTTGCTATCATTTTGCACCCAAGATTCCTACAATgcacatttaaaaatacatcCCGGTATTAAATTTTACGTTTGCCGCACTTGTGGGAAAAACTTAAGCACCAAGAGTTCCCTAAAGGTTCACATCGACAGTGTACACACCTTCAAACTGCTTCACAAGTGTACAATATGTGGTAAAAGTTTTGCATCGGCCAATCGACTAATGACTCACGCAAAAATTCACAGCAGTAATAAGAAATATGTATGTTCGTATTGTGGATATAACGTTCACACAGCTGGTGACCTTAAAGTTCATATAAGAACTCACACAAGTGAAAGACCATACAAATGTACATTTGTAAATTGTCAAATGAGTTTCAAAACGTCCAGTCACCTGTGCACCCACGTCAGGAGACATCTACAAATacgtaattttaaatgtaaaatgtgtTCTGCCAATTTTGGCACCAGTCACAGTTTAAAAATACATCAAATGCAACACACTGGAGAACGACCACATGCTTGCACCATTTGCCTTCAAACATTTAGGAGAAAGTATCACTTAAAAGTTCACATGAAGCAGCATGCAAAATGTGAATATTAG
- Protein Sequence
- MEIFLEIPKDINKVCRACLNVTEGNDKMFNYQLICDNQLTSISSFFENVTSLKVAVGDGLPESICSDCYESLENAYTYRNRCQYSEEKLKVLLERCTTNIEIEENSDTKELIESDINDTVTDVTSPLKQEYSPYNCQHCNSNFLSNYQLSKHIIEQHNTTKTISERFLENSNEEFEETDIHLSGVNMLKCILRRKRINENLNDTIELMEDDINMEDSKDGYDEINRTDIDCKICRQIYPTLEDLNQHLCEPTDTKTSEIFYKSCILCYKLFSDASALSLHFLKHAFIIQCTKTVNIQSEFLFCEVCGELFNCQQNLDQHYDNQHEGKRLWTCNECCTTFITEMELIKHNLHNCSLTPITFDTNFPCVLCTEIFPSKEELLNHSPIHLMKKYSCKKCLLSFCTQDSYNAHLKIHPGIKFYVCRTCGKNLSTKSSLKVHIDSVHTFKLLHKCTICGKSFASANRLMTHAKIHSSNKKYVCSYCGYNVHTAGDLKVHIRTHTSERPYKCTFVNCQMSFKTSSHLCTHVRRHLQIRNFKCKMCSANFGTSHSLKIHQMQHTGERPHACTICLQTFRRKYHLKVHMKQHAKCEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292618;
- 90% Identity
- iTF_01292618;
- 80% Identity
- -