Basic Information

Insect: Rhagonycha lutea
Gene Symbol: zfh1
Assembly: GCA_958510855.1
Location: OY294037.1:232693-235070[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0036 0.24 12.9 0.2 1 23 204 225 204 225 0.97

2 10 0.82 54 5.5 0.4 1 23 267 288 267 288 0.96

3 10 0.00035 0.023 16.1 4.5 1 23 294 316 294 316 0.97

4 10 0.0082 0.55 11.8 2.4 1 23 322 344 322 344 0.98

5 10 2.5e-06 0.00016 22.9 4.3 1 23 352 374 352 374 0.97

6 10 0.0046 0.3 12.6 8.0 1 20 387 406 387 408 0.92

7 10 3.3e-06 0.00022 22.4 0.8 1 23 418 441 418 441 0.97

8 10 4e-05 0.0026 19.1 0.6 1 23 473 495 473 495 0.98

9 10 1.4e-05 0.00094 20.5 0.2 1 23 501 523 501 523 0.98

10 10 0.00018 0.012 17.0 2.1 1 23 529 551 529 551 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0036	0.24	12.9	0.2	1	23	204	225	204	225	0.97
2	10	0.82	54	5.5	0.4	1	23	267	288	267	288	0.96
3	10	0.00035	0.023	16.1	4.5	1	23	294	316	294	316	0.97
4	10	0.0082	0.55	11.8	2.4	1	23	322	344	322	344	0.98
5	10	2.5e-06	0.00016	22.9	4.3	1	23	352	374	352	374	0.97
6	10	0.0046	0.3	12.6	8.0	1	20	387	406	387	408	0.92
7	10	3.3e-06	0.00022	22.4	0.8	1	23	418	441	418	441	0.97
8	10	4e-05	0.0026	19.1	0.6	1	23	473	495	473	495	0.98
9	10	1.4e-05	0.00094	20.5	0.2	1	23	501	523	501	523	0.98
10	10	0.00018	0.012	17.0	2.1	1	23	529	551	529	551	0.97

Sequence Information

Coding Sequence: ATGAGTACGACAAACACAgtaattttaatgaatattGAAAAGATATGTCGAATATGTTTGATAGAATGCGACAACATGAAATCAGTATTTAGTAAACTAGATGATAATCAACTTTTAGAAATAAACATCTCAAATTTGTCAGATGTATTGACAAGAATTACAAATTTACCAATTTCTGCAGATGATGGATTCCCATCCATGGTGTGCTCCAACTGTTGGAATCTTGCGTACGGGGCTtataaatttaaagttcaatttgATCATTCCTACACAATTTTACAACAATACATTACCAGTTGTGTTAAAATTGAAACACAAACTAACGTGCTACTTGATTATACAGATTCTAATAGTTTTGACTATGAATCTAATGTTGCCGACGATTTTATCGATTCGATTGCTAGATCTCAAGAGAAGCAATTTGGTAAAAGACGTACCAGTCAAAAACAAATAGAAAAACGACAATGTAACACCTCGGTTGAAATTCGCCAACAATCAAGAAAACgtggaagaaaaagaaaattaaaattgtctaACGACGACGACGATGCTGAAGACGATACAGATAAAGTTCGAGATGTAAGTGAAAATGACGAGGAACCCGTATTGCATCCTTGTCCTATATGTACCAAAGAATTTATAGCGGTGGAATTGCGTCGACATGCACAAACACACAAAGCTTTAAAGAAGTATCTGCACATTCCACAAGATAAGAAAGTGGGCCATAGGGTGAGGTTTTATAAAGAGGCAGAGTTTAGAAATCGAACTGTAGGTTTCCACAGTCGTAAGGAAAAGCTGCACAAATGTGTTGTATGTGATATGGAATACGGAGCAGTGCAATTGCAAATACATTTCCAAAGTCATCGTAATCAGACGGAATACAAATGTGATCAGTGCCAACGCGTGTTCAGAAAACTAAATCATTTAAATACTCATCGTGTCAAGCATTTAAAAGAGTGTCCCTTCAAGTGCGAACAGTGCGGAAAGGGATTTGTTATTAAGACAAATTACGATTGTCACATGTTGACTCACAACACTAATCAAGAATTGCCCCACGAATGTAAATATTGTTTGAAACGCTTTTCCAATCCAGAACATTTAAATCGCCACATGATTATGCACACAGAAAATGTTAGTTATTCAGAAAAGTATAAAGTTTGCAAGTGCCATCATTGTCTTAAGACATTTAAGGACCGATCCGAATTAAAATCTCATGAATGTATTCCTATAGATCAAATTGTCAACATTCGCTATCCATGTAATATatgcaacaaaatttttaaaaattcaagtgGCTTATATAATCACAAGCGCAACATTCATAAATTAAAAGGAGCCAAAATCTTATGTTCGGTATGTGGAAATTATGTGTcgaacatttataatcacatgATGCGACACACCGGAGAAAAACCATTTCAATGTGATCAATGCAGTAAACGATTTGTTGGAAAACCACAACTACGCCAACATTTACTTGTACATTCTGGCTTAAAACCCTTTGTTTGTAGCGTTTGTGCAAAAGCTTTCAATAACTTGTACAATTTACAAGTTCACGAAAGGATTCATAAAGGAAATCGCTGCCACATTTGTACCATCTGTAATAAAGGATTTCTAGAGAAATCATATTTAAAGAAACATATGAATGTTCACACTAAAATGTAA
Protein Sequence: MSTTNTVILMNIEKICRICLIECDNMKSVFSKLDDNQLLEINISNLSDVLTRITNLPISADDGFPSMVCSNCWNLAYGAYKFKVQFDHSYTILQQYITSCVKIETQTNVLLDYTDSNSFDYESNVADDFIDSIARSQEKQFGKRRTSQKQIEKRQCNTSVEIRQQSRKRGRKRKLKLSNDDDDAEDDTDKVRDVSENDEEPVLHPCPICTKEFIAVELRRHAQTHKALKKYLHIPQDKKVGHRVRFYKEAEFRNRTVGFHSRKEKLHKCVVCDMEYGAVQLQIHFQSHRNQTEYKCDQCQRVFRKLNHLNTHRVKHLKECPFKCEQCGKGFVIKTNYDCHMLTHNTNQELPHECKYCLKRFSNPEHLNRHMIMHTENVSYSEKYKVCKCHHCLKTFKDRSELKSHECIPIDQIVNIRYPCNICNKIFKNSSGLYNHKRNIHKLKGAKILCSVCGNYVSNIYNHMMRHTGEKPFQCDQCSKRFVGKPQLRQHLLVHSGLKPFVCSVCAKAFNNLYNLQVHERIHKGNRCHICTICNKGFLEKSYLKKHMNVHTKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292546;
90% Identity: iTF_00270392;
80% Identity: -