Rlut018043.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:58247295-58252062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00048 0.032 15.6 0.3 1 23 62 84 62 84 0.97 2 12 0.0001 0.0067 17.8 2.7 1 23 90 112 90 112 0.98 3 12 0.00019 0.012 16.9 0.9 3 23 120 140 118 140 0.98 4 12 1.3e-05 0.00089 20.6 0.3 1 23 146 168 146 168 0.98 5 12 0.00016 0.011 17.1 1.9 1 23 174 196 174 196 0.97 6 12 0.00024 0.016 16.6 3.9 1 23 202 224 202 224 0.98 7 12 0.88 59 5.4 0.2 1 23 230 252 230 252 0.96 8 12 0.0031 0.2 13.1 4.5 1 23 267 289 267 289 0.99 9 12 5.6e-05 0.0037 18.6 0.7 1 23 295 317 295 317 0.98 10 12 0.013 0.88 11.1 0.7 1 23 323 345 323 345 0.95 11 12 0.00039 0.026 15.9 2.4 3 23 353 373 351 373 0.98 12 12 0.98 65 5.2 0.1 1 13 379 391 379 394 0.89
Sequence Information
- Coding Sequence
- ATGAACAATGTGGGAGTGCCGGAAGCATTTTTGTATGTTCCATGCAACGAAATTAAACCAGAACCTATGGAAGCTGTGAAAATCGAGGAGGAAGAATTGCATCACTCAGTCGACATTAAAGAAGAAACTGTAATTAAAGAAGCACCTCTGGATCTGGAACACGAAACACAAACGAATAAACCATTTGCGTGTCAAATCTGTGAGTATAGAAGTGCGTACAAAGGAAATTTGAAGGAACATCTCAAAGTTCATTCGGGTGAAAAACCATACGCATGTGGAATTTGTGTTTCGAGGTTTTCAAAAAAGGAACATTTAAAAAGGCATCTAAAAACGcataccggggagaaaccgttcgGGTGTACAATTTGCGACTATAAAACTGCTCATAAATCtgatttaaatattcatttaataACCCACACCGATAAGAAGCCGTTCATTTGTGACATTTGCAAACGTGGATTTCCTAAACGAGACACTTTAGTTAAGCATTTAAGAATACATTCGGGGGAGAAGCCCTTTTCGTGTGcaatttgtgattttaaatgttCTCGGAAGGATGCTTTGAAAACCCACTTAATTTCGCATACCGGGGAGATGCCATTTTCATGTGATTTGTGCGACTTTAAATGTTCCCGAAAATCATCCTTGAAAAGTCATTTGGTAACGCATTCCATTGAAAAACCGTTTACTTGTGCGATCTGTGAAAGTAAATTTTTGCTGGAAAGGGATTTAGAAAATCATGTGAAAATCCATACCGTCGAGATCGTTTATTCGGAAAGGGATAGTCAGAAACTGTATACATGTGAGAGTTGTGATTACAAGTGTCGAAATAAAGCTACGATGAGATACCACGTgagaactcacaccggggagaagcCATTTCCATGTGAATTTTGTGACATGAAATTTATACTGCAAGGAAAATTGAGGAATCATTTAAGGACACATacaggtgaaaaaccgtttttgtgtgatatttgtgattataaagGTGCATCTCGTGATCGTTTGAAAaagcattttaaaattcatactGGTGACAAGCCGTATGGGTGTACAATTTGTGACCATAAATCTTCGGATCGATATCGTTTAAAAGTACACATGAGAACCCATACTGGAGTGAAGCCgtttgtgtgtgaaatttgtaacgtTACGTATGCTAGTAAGCAAGaaactattgTATTGTGTGGAAGAACGCCTAGAAACGACGAATTCTACCATATTTATAGCTTGGTTCTACAAACTACAGCTTTGTCTTCACCGCCTCATGAAGTGTCAGGGCTAATCAATAAAAAAAGCTTGTCGATATCAAAGTACTCTTGTTCGTGTAAAGCTGGTGCATCGAAATGCTGTAAGCATGTAGTTGGAGTTTTAATATATTGCAGCAGAAATAATTTAGACGAGTTAACGAGTTAA
- Protein Sequence
- MNNVGVPEAFLYVPCNEIKPEPMEAVKIEEEELHHSVDIKEETVIKEAPLDLEHETQTNKPFACQICEYRSAYKGNLKEHLKVHSGEKPYACGICVSRFSKKEHLKRHLKTHTGEKPFGCTICDYKTAHKSDLNIHLITHTDKKPFICDICKRGFPKRDTLVKHLRIHSGEKPFSCAICDFKCSRKDALKTHLISHTGEMPFSCDLCDFKCSRKSSLKSHLVTHSIEKPFTCAICESKFLLERDLENHVKIHTVEIVYSERDSQKLYTCESCDYKCRNKATMRYHVRTHTGEKPFPCEFCDMKFILQGKLRNHLRTHTGEKPFLCDICDYKGASRDRLKKHFKIHTGDKPYGCTICDHKSSDRYRLKVHMRTHTGVKPFVCEICNVTYASKQETIVLCGRTPRNDEFYHIYSLVLQTTALSSPPHEVSGLINKKSLSISKYSCSCKAGASKCCKHVVGVLIYCSRNNLDELTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292315;
- 90% Identity
- iTF_01292315;
- 80% Identity
- -