Rlut018488.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:62949851-62951074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 10 7.8 2.8 2 23 56 77 55 77 0.96 2 12 7.9e-05 0.0052 18.1 0.9 1 23 82 104 82 104 0.98 3 12 0.00014 0.0096 17.3 1.3 2 23 111 132 110 132 0.97 4 12 0.018 1.2 10.7 2.2 1 23 138 160 138 160 0.96 5 12 0.033 2.2 9.9 3.5 1 23 173 195 173 195 0.95 6 12 0.00023 0.016 16.6 0.6 1 23 201 223 201 223 0.98 7 12 4e-06 0.00027 22.2 1.0 1 23 229 251 229 251 0.98 8 12 0.00077 0.051 15.0 4.4 1 23 257 279 257 279 0.98 9 12 0.0036 0.24 12.9 4.2 1 23 292 314 292 314 0.99 10 12 6.6e-05 0.0044 18.4 0.3 1 23 320 342 320 342 0.99 11 12 0.00079 0.052 15.0 1.1 1 23 348 371 348 371 0.92 12 12 6.3e-06 0.00042 21.6 0.7 1 23 380 402 380 402 0.98
Sequence Information
- Coding Sequence
- ATGGAGAAAGCTAATTCATCGATAGAgttctttaaaataaaagaagagGCTGTGGAAGAAGATATCAAATTTAAGTTGGAAGACTTGCATCATTCGATTGATATTAAAGAAGACGAACCGTTTGAAGAGGATGAAGAAacggaaacaaaatttttgaaactaatgGAATGTTTGGTATGTAAGTTTGAATTTACTTGTAAGTCAGAATTCACGAAACATGCAAAAGTTCATAAGAGCTCTAGTTTCCAATGTGCTCTATGTTCCAAAATATATACTAGGAAGTACAAATTGGCAGTTCATTTAAAACTTCACAGTGAAGATAATTCGACTACGTGTAAAATTTGTAACCGCATATTAGCAACCAGTCATGGGTTAAAACAGCATATGAATATTCATACCCAAAAGAAATTGTTTTCATGttcaatttgtaatttcacAAGTTTACATCAAAGCAGTTTGGAAAAGCATTTATTATTACATGAACGTGAAAACTCTAATATTAAAAGGGGGAAACGGCATatatgtgaaatatgtgactatCGTGGTTTAACTAAATGTAACTTGAGAAAACACATGAAAGCCCatactggtgaaaaaccatttgttTGTGGAATTTGTGATTCAAAATATAGAGAAAAAACAAAACTGGTAGTTCATATGAGAAAACACACCGGCGACAAACCATTCGAGTGTGATATTTGTGGCTTTAAATTTACACGTAAAGAAgtattaaaaaatcatttaagcactcatacaggcgaaaaaccttTCGAGTGTAAAGTTTGTAACTTTAAAAGTGCACGTAAATATACTCTGCATCTACATATGAAAACTCATACTTTGGGGAGCTCGTTGGCAGATGTCGAGAAATCGTTTAAGTgtcaaatttgttattataaaggTGCAACCAAACGATGTTTGAAATTGCATATAAGAACtcataccggcgaaaaaccttataagtgtgaaatttgtgactttaagACTGCACGTAATCAGGCTTTGAAAGATCATGTAAGAATacatactggcgagaaaccgtatGCTTGTAAAATATGCGACCATAAATTTGCAACAGCAGCATGTTTGAGGCTGCACACCATCGGAATTCATAAGATATCATCAGAAAGACGTATGTTTGTATGTACAACGTGTGGCCTTAAATTTGTACGTAAAGAAGCTTTGAAAAGTCACTTAAAACTTCATTCAAGCAACAGTTGCTAG
- Protein Sequence
- MEKANSSIEFFKIKEEAVEEDIKFKLEDLHHSIDIKEDEPFEEDEETETKFLKLMECLVCKFEFTCKSEFTKHAKVHKSSSFQCALCSKIYTRKYKLAVHLKLHSEDNSTTCKICNRILATSHGLKQHMNIHTQKKLFSCSICNFTSLHQSSLEKHLLLHERENSNIKRGKRHICEICDYRGLTKCNLRKHMKAHTGEKPFVCGICDSKYREKTKLVVHMRKHTGDKPFECDICGFKFTRKEVLKNHLSTHTGEKPFECKVCNFKSARKYTLHLHMKTHTLGSSLADVEKSFKCQICYYKGATKRCLKLHIRTHTGEKPYKCEICDFKTARNQALKDHVRIHTGEKPYACKICDHKFATAACLRLHTIGIHKISSERRMFVCTTCGLKFVRKEALKSHLKLHSSNSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -