Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:60253226-60254833[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0036 0.24 12.9 1.3 1 23 76 98 76 98 0.98

2 16 0.0012 0.078 14.4 2.2 1 23 104 126 104 126 0.97

3 16 0.15 9.7 7.8 0.2 1 23 134 156 134 156 0.96

4 16 0.00087 0.058 14.8 0.6 1 23 162 184 162 184 0.97

5 16 7.7e-05 0.0051 18.2 3.5 1 23 190 212 190 212 0.98

6 16 0.0029 0.19 13.2 0.8 1 23 218 240 218 240 0.98

7 16 5.5e-05 0.0037 18.6 2.2 1 23 246 268 246 268 0.98

8 16 7.7e-05 0.0051 18.2 0.7 1 23 274 296 274 296 0.96

9 16 0.0037 0.25 12.9 3.3 1 23 302 324 302 324 0.97

10 16 0.02 1.4 10.5 0.4 1 23 330 352 330 352 0.97

11 16 1.2 81 4.9 5.5 1 23 358 380 358 380 0.96

12 16 0.00051 0.034 15.6 2.9 1 23 386 408 386 408 0.97

13 16 0.064 4.3 9.0 2.7 1 23 426 449 426 449 0.89

14 16 0.0065 0.43 12.1 6.1 1 23 455 477 455 477 0.98

15 16 0.0036 0.24 12.9 5.2 1 23 483 505 483 505 0.98

16 16 2.5e-05 0.0016 19.7 4.8 2 23 512 533 511 533 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0036	0.24	12.9	1.3	1	23	76	98	76	98	0.98
2	16	0.0012	0.078	14.4	2.2	1	23	104	126	104	126	0.97
3	16	0.15	9.7	7.8	0.2	1	23	134	156	134	156	0.96
4	16	0.00087	0.058	14.8	0.6	1	23	162	184	162	184	0.97
5	16	7.7e-05	0.0051	18.2	3.5	1	23	190	212	190	212	0.98
6	16	0.0029	0.19	13.2	0.8	1	23	218	240	218	240	0.98
7	16	5.5e-05	0.0037	18.6	2.2	1	23	246	268	246	268	0.98
8	16	7.7e-05	0.0051	18.2	0.7	1	23	274	296	274	296	0.96
9	16	0.0037	0.25	12.9	3.3	1	23	302	324	302	324	0.97
10	16	0.02	1.4	10.5	0.4	1	23	330	352	330	352	0.97
11	16	1.2	81	4.9	5.5	1	23	358	380	358	380	0.96
12	16	0.00051	0.034	15.6	2.9	1	23	386	408	386	408	0.97
13	16	0.064	4.3	9.0	2.7	1	23	426	449	426	449	0.89
14	16	0.0065	0.43	12.1	6.1	1	23	455	477	455	477	0.98
15	16	0.0036	0.24	12.9	5.2	1	23	483	505	483	505	0.98
16	16	2.5e-05	0.0016	19.7	4.8	2	23	512	533	511	533	0.96

Sequence Information

Coding Sequence: ATGCAAGAAGTATTTTTGGAAGAGTTTAAAATATTAGACGAAACCACATATTTGTTGCAAACCCCGCATAATTCAAATTGTATTGAAGAAATCAAGCAAGAGGAACCGGAATATGTGGAATTCCGTTTGGAAGAACTGCATCACTCAATTGACATCAAGGAGGAGAACCCTGCTCTGGAAGATCGCAAAGCAGCAAAAATACTCGTCCAGTCTCAAGATAAACTGTTTGAATGTGGAATATGTCAATATAAAAGTGCAAAAAGGAGAAACTTCAGGAACCATGTAAAAATTCATACCGATAAGAAACCATTTGCATGTGAAGTTTGCGACTTTCGAACTGCTCATAAGGGTAGATTGAGAAAGCATCTAAAAACTCACGATTCACATGACCAGAAGCCGTTTGCTTGCGAAATGTGTGAATATAGAAGTTTACGTGCACGAGATTTGCGGAATCATGTAATAACTCACACCGGTCAAAAGCCATTCGCGTGtgaattttgcgaatttaaaaCTGCTCGTAAGGATGGATTGAAAAAACATGTAAGAATTCATACTGGGGAAAAACCGTTTAGTTGTGAGCTGTGCGACTTTAAATGTAGCCGTCAGTATGGTTTGACAGATCACATGAAAACTCACTCTGACCAAAAACCATTCACATGTGACAGCTGTGACTTTAAAACCGCACGTGAGGATGGTTTGAAAAAGCATTCAAGGATTCATTCTGGTGAGAAGCCGTTCCAGTGTGAAGGTTGCGACTTCAAATGCGCCCGAAAAGACGGGTTGAGGAAACACGTCAAAATGCATACTGGCGATAAACCATTTGTTTGTGAAATATGTGGGTCAAAATTTACTCAAAAGAAATATTTACAAGTTCATTCAAGTGTTCACGCGGAAGAAAAACCGTTTGTGTGTGAATTTTGTGGTTATAAATGCTTCCGCAAAAATGTTCTCCAGGAACATTTGCGAAGTCACACTGGGGAGAAACCATTTAGCTGTGACGTTTGTGACTTTAAAAGTGCCCGTAGGGATGGGGTGAGAAAACATGCAAAATTGCATACGGGTGAAAAATCTTTTGTGTGTGAATGCTGCGGGTATAAATGTTTCCTGAAGAGAACTTTGAAGGACCACTTAAGAATCCATACTGGCGAGACGCCATTTGCATGCGAAATCTGTGACTTTAAGTGTAAGTTGAGGCAAGGGTTAAAGCGGCACATGAATACCCATACGGGCCAAACGAGGGTGGAATCTGAAAGTTTGAGCATTAATGTGAACCCGTTTTCCTGTGGAATCTGTCACTACAAAAATTTGACGAAGGAAAATTTGAAACGCCATATTAAGAGGATTCATTCCGGCGTGAAACCGTTTGCGTGTAAGATTTGTGATTATAAGTGTTCCTGCAAGTCAAAATTGACCGAGCATATAAGGACgcataccggcgagaaaccgtatgcgtgtgaaatttgtgattataaatgttcaTTCAAGCCAAGTTTGAAACACCACAGAACAACTCATGGCGACGGGAAGCCTTGtgcgtgtaaaatttgtgactacaaatgtacaACCCCGCAAGGTTTAAAACGGCACATGAGAACTCATAGCTCCTAG
Protein Sequence: MQEVFLEEFKILDETTYLLQTPHNSNCIEEIKQEEPEYVEFRLEELHHSIDIKEENPALEDRKAAKILVQSQDKLFECGICQYKSAKRRNFRNHVKIHTDKKPFACEVCDFRTAHKGRLRKHLKTHDSHDQKPFACEMCEYRSLRARDLRNHVITHTGQKPFACEFCEFKTARKDGLKKHVRIHTGEKPFSCELCDFKCSRQYGLTDHMKTHSDQKPFTCDSCDFKTAREDGLKKHSRIHSGEKPFQCEGCDFKCARKDGLRKHVKMHTGDKPFVCEICGSKFTQKKYLQVHSSVHAEEKPFVCEFCGYKCFRKNVLQEHLRSHTGEKPFSCDVCDFKSARRDGVRKHAKLHTGEKSFVCECCGYKCFLKRTLKDHLRIHTGETPFACEICDFKCKLRQGLKRHMNTHTGQTRVESESLSINVNPFSCGICHYKNLTKENLKRHIKRIHSGVKPFACKICDYKCSCKSKLTEHIRTHTGEKPYACEICDYKCSFKPSLKHHRTTHGDGKPCACKICDYKCTTPQGLKRHMRTHSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292317;
90% Identity: iTF_01292317;
80% Identity: -