Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294036.1:99229666-99231447[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0096 0.64 11.6 0.2 2 20 275 293 274 295 0.93

2 10 0.001 0.069 14.6 0.6 2 23 303 324 302 324 0.96

3 10 4.3e-07 2.9e-05 25.2 0.5 3 23 332 352 330 352 0.98

4 10 3e-05 0.002 19.5 0.1 1 23 358 380 358 380 0.99

5 10 1.3e-05 0.00088 20.6 0.7 1 23 386 408 386 408 0.97

6 10 1.2e-07 7.8e-06 27.0 3.6 1 23 414 437 414 437 0.97

7 10 3.3e-05 0.0022 19.3 0.6 1 20 443 462 443 465 0.92

8 10 0.0026 0.17 13.3 1.8 1 23 471 493 471 493 0.97

9 10 0.057 3.8 9.1 5.3 1 23 504 526 504 526 0.98

10 10 0.00019 0.013 16.9 1.2 1 23 530 553 530 553 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0096	0.64	11.6	0.2	2	20	275	293	274	295	0.93
2	10	0.001	0.069	14.6	0.6	2	23	303	324	302	324	0.96
3	10	4.3e-07	2.9e-05	25.2	0.5	3	23	332	352	330	352	0.98
4	10	3e-05	0.002	19.5	0.1	1	23	358	380	358	380	0.99
5	10	1.3e-05	0.00088	20.6	0.7	1	23	386	408	386	408	0.97
6	10	1.2e-07	7.8e-06	27.0	3.6	1	23	414	437	414	437	0.97
7	10	3.3e-05	0.0022	19.3	0.6	1	20	443	462	443	465	0.92
8	10	0.0026	0.17	13.3	1.8	1	23	471	493	471	493	0.97
9	10	0.057	3.8	9.1	5.3	1	23	504	526	504	526	0.98
10	10	0.00019	0.013	16.9	1.2	1	23	530	553	530	553	0.94

Sequence Information

Coding Sequence: AtgtctaaattaaataatttaaaatcaaaatcgGGTATTAAGAACAGGATTCTCCACTTCAACAAAATTTGCCGGTCTTGTTTAACCGAACGAGGCCACTTACGTGACATATTTTCTACCCGTTTACCACTAATGATTCAAAATTGTGCTGGAATCGAGGTTGTCGAAAACGATAAACTGCCAAGCAAAATATGCGTGTCATGTTTCCATCAGATTGCCAAATTGTATACCTTCAAGAAGAAACTGGAACGAAACGATAAGATTTTGAGAAACAACCTGAAGTTACAAAAGTCAAACAAATCGAAAGAGTTCTCCGATATTTTACATAAAGCGGTTAATGACGCAGAAATTATATTGCATGATAATAAAAGTGCTAAGACTGAATGTGACGAAAGCGATTCGACTGACGATGAGGATGTGCCCTTAAGCGAAAGGTTAAAAAATAGAGCAGCACAGAGTTCGTCTCGGTTGTTACGTAAAAGTAAGCAGAAagctaataaaattattgacgATATAATTAGATCGGAAGAAGATTCTGACGTTTCGGAGAGTTTTAGTGATGTTGAGAGTGGATCGTTTCACGAGGAGTTTAAACCTGTCTTGAAGTGTTCTAACTTTGAATCGGTATTTTATAACGATGAGCCACCCCCGTTGATACCTCTAGTGCCCACAAAATCGACAAATACTGTCGACAGCATTCCGAAAAATCTACCGGAAAATGCTCCTCCTTTAGTACCAATTAAATCGCTTACGTCTTTAAATCCGGCAGTTATTGTGAACACTTTAGGTGACAACATTGAAAATTCTATGGAATTAAAATTGCAGTGCAATGTTTGCAACGAAGAATTTAATTCTGTGTTTGCTTTAAAAAATCATCGCTTGAATTATTGTCAAGCTTCTAATATGCAGTGCAATATTTGTAAGAAAGAGTTTAACGATAGGACGCGCCTGATTGGGCACCTGAAAGGTCACATGGTGTCGAAGGACTATGGGTGCAAGATCTGCGGAAAACGTTACCCAAATCCGAGTACGTTTCGAGTGCACATGCGAACTCACACCGGTGAGAGACCTTACAAATGTCAGGTCTGCAACAAGGGGTTTGTGCGTTGGGCAGGCGTAGTGGGGCACATGAAAACTCACAATTCTAACAAACCTTACAAGTGTGAGACGTGCGGAAAAGGTTTCAAAATAACTTCGAATTTGGAGCGTCACAAAATTTTACACTCCGGAATTTTACCGTACTGTTGCAGTTATTGTGGTAAAACTTTCAGTCAATCAGACAATTTGCAACTTCACGTGCGAACATATCACACCAACGACAGGCCTTATTTGTGTAACGAATGCGGTAAACGGTTTGTCAGCTCGACACGATTGAAAAGACACATGTGGGTGCACACCGGGTACAAGCCGTACATGTGCCGCTACTGCACCAAAGCATATTCTAACTCAAATGATCGCAAAAATCACGAGCGTGGTCACACGGGTGGAATTTCGGATTCGGACAAACCTTATGCATGCAATTCGTGCGATATGAGGTTTTTACATCCTTGCAGATTGACCAAACATATGAAAACACACGAAAGACCTTATCCTTGTAATGAGTGTACTAGAACTTTTAGTTCGGAAATTTTACTAAACAAACACAAGAGTAACAAACATGGGCCCCAATTTGCTGATCATTTGTCTATGCCGTTAACGGTTGAAGAggtttacataaattattag
Protein Sequence: MSKLNNLKSKSGIKNRILHFNKICRSCLTERGHLRDIFSTRLPLMIQNCAGIEVVENDKLPSKICVSCFHQIAKLYTFKKKLERNDKILRNNLKLQKSNKSKEFSDILHKAVNDAEIILHDNKSAKTECDESDSTDDEDVPLSERLKNRAAQSSSRLLRKSKQKANKIIDDIIRSEEDSDVSESFSDVESGSFHEEFKPVLKCSNFESVFYNDEPPPLIPLVPTKSTNTVDSIPKNLPENAPPLVPIKSLTSLNPAVIVNTLGDNIENSMELKLQCNVCNEEFNSVFALKNHRLNYCQASNMQCNICKKEFNDRTRLIGHLKGHMVSKDYGCKICGKRYPNPSTFRVHMRTHTGERPYKCQVCNKGFVRWAGVVGHMKTHNSNKPYKCETCGKGFKITSNLERHKILHSGILPYCCSYCGKTFSQSDNLQLHVRTYHTNDRPYLCNECGKRFVSSTRLKRHMWVHTGYKPYMCRYCTKAYSNSNDRKNHERGHTGGISDSDKPYACNSCDMRFLHPCRLTKHMKTHERPYPCNECTRTFSSEILLNKHKSNKHGPQFADHLSMPLTVEEVYINY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00927975;
90% Identity: iTF_00927975;
80% Identity: -