Rlut018186.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:59802270-59837487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3e-05 0.0015 19.8 2.7 1 23 173 195 173 195 0.97 2 11 2.9e-05 0.0019 19.5 0.9 1 23 201 223 201 223 0.98 3 11 0.0027 0.18 13.3 0.6 1 23 334 356 334 356 0.95 4 11 5.4e-06 0.00036 21.8 1.1 1 23 362 384 362 384 0.98 5 11 0.00015 0.0099 17.3 0.3 1 23 390 412 390 412 0.98 6 11 0.0014 0.093 14.2 0.2 1 23 418 440 418 440 0.97 7 11 0.0011 0.075 14.5 2.2 1 23 446 468 446 468 0.99 8 11 0.00017 0.011 17.1 1.9 1 23 474 496 474 496 0.97 9 11 0.021 1.4 10.5 3.0 1 23 502 524 502 524 0.97 10 11 0.00016 0.011 17.2 2.0 3 23 532 552 530 552 0.98 11 11 4.6e-06 0.00031 22.0 2.7 1 23 558 580 558 580 0.98
Sequence Information
- Coding Sequence
- ATGGAACAAGTACTTTTGAAAGAGTCAGAATATTTCAATGAATCCAAACTTTTAATACAAACCCATTGTAATTTGGTATATGATTATGAAGTTAAGAACGAAGCCCCAGAAGACAAAAAGTTCTATTTGGGAGACCTTCATCATTCAATCGATATTAAAGAAGAAACCGATTCTGCAGAACCTCAAGAAAGTGATAAAATCATGGAACAAGTGCTTTTGAAAGAGTTAGAATATTCAAAAGAATCTAGTGATGATTTCCAAACACAGATTAATATGATGGATAATTATGACGTCAAGCAAGAGGTTCTGGAAgatataaaatacaatttggaaGACCTTCATCATTCAATTGACATAAAAGAAGAAATCAAAGCTATTTCGGGTTCTTCTTTGGAACCTGAAGAAAATGCCAAATTTAAGTCACAACAACCTGTTTGTAAGAGTGAGAGAgatgtatttaaaattgaagaCCATCGAGGTTCAGAAGAACAACACTTGAAAACCTCGGAGAAGTCATTTGCATGTGAAATATGTGATTATAAATCTTCAACCAAACACTACTTAAATCGGCATATGAAAATTCATACAGATGATAGACCGTTTGTgtgtgaaatatgtgattttaGGTTTTCTATTAAACCATATCTGAAACTCCATATGAGAAAGCATACAGACAGTTCGCAACGAAAGTTAGTTATGGAACAAGTGTTTTTGAAAGAGtcagaatatttgaaagaaACTAAAGTGTTTTTACAAACCCAGTGTAATTCGATTAGTAATTATGAAGTTAAGAAAGAGGACCCAgaagatataaaattcaatgtGGAAGACCTGCATCACTCGATCGATATTAAAGAAGAAACCAATACTGTGGAACCTCAAGAAAGTGATAAAAGTAAGCAACAACAATTTGACATTTGTAAGAGTGAGAAATATGGATCTAAAATCGAAGACAGTCGAGGTTCAAAAAACCAACGATTGAAAGACTCGAAGAAGTCATTTGCatgtgaaatatgtgactataaatcttTAACTAAACCCTACTTAAAACGGCATATGAAAATTCATACTGCCGATAAATCATttgtgtgtgaaatttgtgatatgaaattttctattaaaacatATTTGAAACTCCATATGAGAACGCATACAGGTGTGAAACCTTTTGAATGTGCAATTTGTGGGTATAAAGGTACGACTAAGGGTCGTTTAAGTGACCACATGAGaactcacactggcgagaaaccatttgcttgcgaaatttgtgactataaaggGGCACTTAAGATTTCACTGACGCGCCATATGAGATTGCATTTTGATGAGAAACCATatgtttgtgaaatttgtgagaATAGGTATACTAATGGAAGTTGCTTGAAGCTGCACATGAAACGGCATACTGGAGataaaccgtttgcttgtgaactttgtgattataaatgttcaCGTAAACAACCATTAGAACTTCATATGAGAACACATACCGGTGACAAACCGTTTGCATGTGAGTTTTGCGAATATAAATGTTCACTGAGAAAAGCGTTAACAGAACATACGAGAAcgcatactggtgagaaaccgtttgggtGTGAAATCTGTGAGTATAAAAGTGCACGTAAAGGACATCTGAAGCGGCATATGAAATCGCATATAGGTGAAAAGCCTTtttcatgtgaaatttgtgactataaatgtattCGTAGTGACCAATTGAAACTGCACATGAGAAcgcataccgTTACTCAACGAAAGGAAGTAATGGAACCAGTGCTTTTGCAAGAGttagaatatttaaaagaaaCTAAAGTTTTTATACAAACCCAGTTTGATTATGAAGTTAAGACAGAGGACCCGGAAGATATGAAATTCAGTTTGGACGACCTACATCACTCAATTGACATTAAAGAAGAAAACGCTTTTTTGGAACCTGAAGAGAGTGACAAAATTAAATCACAACAATTAGACGTTTGTAAGAATGAGAAAAATGGATCTAAAATTGAAGATTATGAAGGATCAAAACAGCAACTTTTGGAAGGTTCGAGTAGTATCCCTATCGGAAAGCCTTTTGCATACGAAGGTTCCTTCATTTCACACATGGGGAGGTTAGCGGAAGAAAATGATAATGAGGTAAGGTGA
- Protein Sequence
- MEQVLLKESEYFNESKLLIQTHCNLVYDYEVKNEAPEDKKFYLGDLHHSIDIKEETDSAEPQESDKIMEQVLLKELEYSKESSDDFQTQINMMDNYDVKQEVLEDIKYNLEDLHHSIDIKEEIKAISGSSLEPEENAKFKSQQPVCKSERDVFKIEDHRGSEEQHLKTSEKSFACEICDYKSSTKHYLNRHMKIHTDDRPFVCEICDFRFSIKPYLKLHMRKHTDSSQRKLVMEQVFLKESEYLKETKVFLQTQCNSISNYEVKKEDPEDIKFNVEDLHHSIDIKEETNTVEPQESDKSKQQQFDICKSEKYGSKIEDSRGSKNQRLKDSKKSFACEICDYKSLTKPYLKRHMKIHTADKSFVCEICDMKFSIKTYLKLHMRTHTGVKPFECAICGYKGTTKGRLSDHMRTHTGEKPFACEICDYKGALKISLTRHMRLHFDEKPYVCEICENRYTNGSCLKLHMKRHTGDKPFACELCDYKCSRKQPLELHMRTHTGDKPFACEFCEYKCSLRKALTEHTRTHTGEKPFGCEICEYKSARKGHLKRHMKSHIGEKPFSCEICDYKCIRSDQLKLHMRTHTVTQRKEVMEPVLLQELEYLKETKVFIQTQFDYEVKTEDPEDMKFSLDDLHHSIDIKEENAFLEPEESDKIKSQQLDVCKNEKNGSKIEDYEGSKQQLLEGSSSIPIGKPFAYEGSFISHMGRLAEENDNEVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -