Rlut018713.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha lutea
Gene Symbol
-
Assembly
GCA_958510855.1
Location
OY294038.1:65652714-65665517[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00058 0.039 15.4 3.1 1 23 348 370 348 370 0.98
2 14 0.0049 0.32 12.5 2.4 1 23 376 398 376 398 0.98
3 14 0.00039 0.026 15.9 0.8 1 23 420 442 420 442 0.99
4 14 0.019 1.2 10.6 3.0 2 23 449 470 448 470 0.97
5 14 1.7e-05 0.0011 20.2 1.0 1 23 559 581 559 581 0.98
6 14 6.9e-07 4.6e-05 24.6 1.3 1 23 587 609 587 609 0.98
7 14 0.00014 0.0094 17.3 1.1 1 23 615 637 615 637 0.98
8 14 2.2e-05 0.0014 19.9 0.7 1 23 643 665 643 665 0.98
9 14 0.0013 0.088 14.3 0.8 1 23 671 693 671 693 0.98
10 14 0.0013 0.085 14.3 0.8 1 23 699 721 699 721 0.99
11 14 0.00041 0.028 15.9 2.4 1 23 727 749 727 749 0.98
12 14 0.38 25 6.5 1.2 1 23 755 777 755 777 0.98
13 14 0.0019 0.12 13.8 3.0 1 23 783 805 783 805 0.96
14 14 2.7e-05 0.0018 19.6 3.7 1 23 811 833 811 833 0.97

Sequence Information

Coding Sequence
ATGGAACCTAATACTAAATTAGAAACAAAAATGGATATAATGATGAAACTGCCTCGAGAAGTTACCGATGAAATTTTAATGCAGTTAGCACCTGCCGATATTCAGAAAGTGTGGAACGGCATTAAAAAATGGAAATGTCTTCAAGATAATGATTACTTCTGGAAGCATAAATGTATAAAAGACGGATATACAGATTTTGAATACAGAAAAAAATCTGAACGATTCCAAGAATTTCTACAAACTTATTCTTCATATTGGAAAAGCGTTTATCTCTATAACATGCAATTGGAATGTAACTGGAAAAATGGCATATATCGTGTAACCCCTGTGCAATGGAAAAATATAGTTTATAAGATCAGATATTTGGATGACGAATTTTTAATTGCTACAACCGAAGAAAATAGTATACTAGTGATAAATTCTCGTAATGcAAACTACTATGGCTCGAAGGAAATCTTGGATTTCAATTTGAACTGTGTAGCGAAACTAGAATGCTGTGAACGCTATATAATTGATTTTATGGCAATAGAACAGGATTACTTAATAACTTATAGTGATTTCTGGAATCCTACTTCTAACCTAAGTGTATGTATATATAATGTGAAAACCAAACAATGTTTTCGTAAAGAAGATCAGATTGCAAGCTTAACTTTTTTAACTGAAGGTAAGTTCCTCGCAATAGGTCTAAGTATGTGGCTCGAAGTGGATGTTCTGGAAAATGGAGAGTGGTCACCTACTACTACATGTACAACGCAGTATTCGGAAAGTGATCAATTCGTAGCAACGCAAATGTGGTGTGCCAAAACAGGGAGATTTCTTGGAACTTTGGATATAGGACCGAATGACGGATTACAACTTCTTAATAAACCCATGATAACGCAAGCAAAGGAAAATCAATGCGCCATTAGCTTCTGTGAAGTTAAGGTGGAAGAAATTGAAGTGAAAGTGGAAGATTATTTGCATCATTCCATTGACCTCAAAGAAGATCCCTCAATTGTAGAGTCTCCATTGGGTATAGGAACTCCTACTGATAATAAACCATTTTCGTGTACATTTTGTGGCTACAAATGTAAACAGAAAGGAGTTTTAGAagaacatttaagaactcacacaggtgagaagCCATTTAAGTGCccaatttgtgactataaaagtgcacACAAAGCGAGCTTGAAATTTCATTTAAGAAATCATACTGGCGCATCCTACATACGAGATATAAAAACACATCTAAAGTCTCATACTGATGGGAAACTGTATAAATGTGAAAATTGCGAATTTAAATATGCAACTGAGGAAAGTTTAAAAGATCACGTCAAAACTCATATAGGCGAGAAACTCTTGGAGTGCAGTACTTGCGATTTTAAATGTACTCTAAAGGCAATGTTGAAAGTTCACTATAAGactcatactggcgagaaaccatttaaataTGTCATTTTTACTATTAGTGCTATGTCAGATGTTATGGACACACCATACCATTCGAATGATTACTCCCAAATTAAGACGGAAGCAGAAACGCAATTCAAGTTGGAAAATTTGCATCATATCAAAATAGAAGAAGAACTCAAGTTTGAAGATTTACATCATTTCATTGATATTAAAGACGAGACTGCAGTTGTGGAATCAGACTTGGATAGTGAAAGCAGAACACAATCAAGTGAAAGAttgtttaaatgtgaaatttgcggCTACCAATTTCAACAGCGAGGAAATCTAGAAAATCATTTCAGActtcacacaggcgagaaaccatttacgtgtgaaatttgtgggtTTAAATTTACCCAAAATGGGCAACTAAAATCTCATTTAAGATCtcataccggcgaaaaaccgtttgagTGTAATTTGTGTGACAATAAGTACGCACACATATCAAATTTGAAGAttcatttaagaattcataCAGGTGAAACACCATTTTCATGTGACATTTGTGGGTACAAGTGTAAGCGACGTGGAGATCTAGCAGTTCACGTAAGAattcacacaggagaaaaacccTTTTCGTGTGCATTTTGTGACTATAGCTGCATACAACAGGGAAGTTTAGATATTCATTTACGAATtcataccggtgaaaaaccCTACAAATGTGGTCTGTGTGAGTTTCAATCGGCTCGTTCGGGAAATGTAAAGAAGCATTTAcgaactcatacaggcgaaaagccgttttcgtgtgaaatttgtaactataaatgtggAGATAAGGGAAAATTAAATATGCACTTAAGAACGCATACTCGTGAAAAGCCGTTTAATTGCGAACTTTGTGTTTATAAGTGTGCAGAAAAGGGGAAATTAGACATTCATGTCAGAAAGCATACTGGTGAAAAGCCATTTAATTGTGTgctttgtgactataaatgcgcaGATAAGAGGAATTTGAAAAGACATTTATTTATTCACTCGGGCGACAAACCGTTTGCGTGTAAAGTTTGCGATTATAAATGTACAACTAAAGGAAGTTTAaacagacatttaaaaactcacactagCGAGtaa
Protein Sequence
MEPNTKLETKMDIMMKLPREVTDEILMQLAPADIQKVWNGIKKWKCLQDNDYFWKHKCIKDGYTDFEYRKKSERFQEFLQTYSSYWKSVYLYNMQLECNWKNGIYRVTPVQWKNIVYKIRYLDDEFLIATTEENSILVINSRNANYYGSKEILDFNLNCVAKLECCERYIIDFMAIEQDYLITYSDFWNPTSNLSVCIYNVKTKQCFRKEDQIASLTFLTEGKFLAIGLSMWLEVDVLENGEWSPTTTCTTQYSESDQFVATQMWCAKTGRFLGTLDIGPNDGLQLLNKPMITQAKENQCAISFCEVKVEEIEVKVEDYLHHSIDLKEDPSIVESPLGIGTPTDNKPFSCTFCGYKCKQKGVLEEHLRTHTGEKPFKCPICDYKSAHKASLKFHLRNHTGASYIRDIKTHLKSHTDGKLYKCENCEFKYATEESLKDHVKTHIGEKLLECSTCDFKCTLKAMLKVHYKTHTGEKPFKYVIFTISAMSDVMDTPYHSNDYSQIKTEAETQFKLENLHHIKIEEELKFEDLHHFIDIKDETAVVESDLDSESRTQSSERLFKCEICGYQFQQRGNLENHFRLHTGEKPFTCEICGFKFTQNGQLKSHLRSHTGEKPFECNLCDNKYAHISNLKIHLRIHTGETPFSCDICGYKCKRRGDLAVHVRIHTGEKPFSCAFCDYSCIQQGSLDIHLRIHTGEKPYKCGLCEFQSARSGNVKKHLRTHTGEKPFSCEICNYKCGDKGKLNMHLRTHTREKPFNCELCVYKCAEKGKLDIHVRKHTGEKPFNCVLCDYKCADKRNLKRHLFIHSGDKPFACKVCDYKCTTKGSLNRHLKTHTSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-