Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:16118653-16120086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.15 10 7.8 3.3 5 23 89 107 88 107 0.96

2 14 0.0011 0.075 14.5 0.4 1 23 113 135 113 135 0.98

3 14 7.8e-05 0.0052 18.1 0.4 1 23 141 163 141 163 0.97

4 14 0.0041 0.27 12.7 0.5 1 23 169 191 169 191 0.96

5 14 3.2e-05 0.0022 19.3 1.3 1 23 197 219 197 219 0.97

6 14 1.3e-05 0.00085 20.6 0.0 1 23 225 247 225 247 0.99

7 14 0.00028 0.019 16.4 0.2 1 23 253 275 253 275 0.98

8 14 3.4e-05 0.0023 19.3 3.6 1 23 281 303 281 303 0.99

9 14 3.1e-06 0.00021 22.5 5.7 1 23 309 331 309 331 0.99

10 14 0.0012 0.083 14.4 0.8 1 23 337 359 337 359 0.97

11 14 0.01 0.67 11.5 1.2 1 23 365 387 365 387 0.96

12 14 0.052 3.5 9.2 2.6 1 23 393 415 393 415 0.97

13 14 4.3e-05 0.0029 18.9 6.9 1 23 420 442 420 442 0.96

14 14 0.055 3.7 9.2 4.9 1 23 448 471 448 471 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.15	10	7.8	3.3	5	23	89	107	88	107	0.96
2	14	0.0011	0.075	14.5	0.4	1	23	113	135	113	135	0.98
3	14	7.8e-05	0.0052	18.1	0.4	1	23	141	163	141	163	0.97
4	14	0.0041	0.27	12.7	0.5	1	23	169	191	169	191	0.96
5	14	3.2e-05	0.0022	19.3	1.3	1	23	197	219	197	219	0.97
6	14	1.3e-05	0.00085	20.6	0.0	1	23	225	247	225	247	0.99
7	14	0.00028	0.019	16.4	0.2	1	23	253	275	253	275	0.98
8	14	3.4e-05	0.0023	19.3	3.6	1	23	281	303	281	303	0.99
9	14	3.1e-06	0.00021	22.5	5.7	1	23	309	331	309	331	0.99
10	14	0.0012	0.083	14.4	0.8	1	23	337	359	337	359	0.97
11	14	0.01	0.67	11.5	1.2	1	23	365	387	365	387	0.96
12	14	0.052	3.5	9.2	2.6	1	23	393	415	393	415	0.97
13	14	4.3e-05	0.0029	18.9	6.9	1	23	420	442	420	442	0.96
14	14	0.055	3.7	9.2	4.9	1	23	448	471	448	471	0.94

Sequence Information

Coding Sequence: ATGATTAAAGTGGAACCTTTAGAAGAATTTCACGATAacgaaaatatttcttgcacTCTGCAATCCACAAACAGATCCAGATCTGATTATAAAAACGACTCAGACGTTCGAAACAATTTTGTGtgcaaaaaggaaattttacattattcatTTGGGTTTAAAGGAGAAGAAATAATAGTCGAACCTCAAATTCACGAAGATTTGGAATTAGAAACAGAAGAATCTTTTTCCAACCGGGTTAGTGACAAAAAACCATTTTTATGCGAGTGCGGTTCACAATTCTCACACAAACAAAGCttaaaaatgcataaaaaaaTTCATACCGGGGAAAAATCATTTGTGTGCGACGTTTGTGGCTCTAAATTTTTACGAAAACAAAGCCTGCagatacatttaaaaattcatacaggAGAAAAACTGTTTGcttgtgaattttgtgattTAAGTTTCGCTTTAAAAGGTAAATTAACTGAACACTTAAGAACGCATACGGATGAGAAAAAGTACTCCTGCGAAATctgtgattttaaatttttgcgaaGAAGAGACTTGGCCCGGCATTCGATAATTCATACGGGAAAAAAACCATTTTCATGTGAAATTTGCACTTATAAAACTTTCCGTGAGAGCGACTTAAAGCGTCACATTAGAAttcacacaggtgagaaaccgtACGTGTGCGAATTTTGCGGTGTTGCGTTTGCAGTACCTCAGGATTTGAAGGTTCACTTAAGAACtcataccggggaaaaaccgtttccGTGTGAATTTTGCCCCATGAAATTTGCGACAAAAGGAACGTTAATCGGGCATTCCAGAACACATACTGGTGAAAAACCCTTTAAGTGcgaattttgtgactataagTTCTCCTTAAAGCAGCAACTGAAGTCTCACTTAAGAAGCCATACCGGAGAGAAACCATTCACATGTAAATATTGTGATTTGACCTTTTCTCATAAGCAGAACCTGAAATACCACGTTAGGACTCACACCGGCGAAAAACCCCACGTCTGCGAAATTTGTGGTGCAAAATTCGCGCGAAGGTATCGCATGGTACTTCATTTAAATAAACACGTGGGTGTACAAACGTTTGCTTGTTTATACTGCGATTTAAAATTCGACTTGAAATGCTCATTAAACGATCATCTGGAGATACACACACTTGAATTTCCTTTCTGCTGCGAATTTTGCGACTCTAAATTTTCTCTCAAGTTGCAGCTTCAAGGTCATCTAAGAGCACACGCGCTTAAAAAGTTTTTGTGCGAGTTTTGTCATAAGAAATTTTCACGGAAGGATCACTTGGTGACTCATTTAAAGactcacacaggcgaaaaaGCCTTCTCCTGTaatttttgcgaaaaaaaatttacgCAAAAAATACAGATGAAGTGTCATATTATAAGAACTCACAAAGCTGACAAATCAATTTAA
Protein Sequence: MIKVEPLEEFHDNENISCTLQSTNRSRSDYKNDSDVRNNFVCKKEILHYSFGFKGEEIIVEPQIHEDLELETEESFSNRVSDKKPFLCECGSQFSHKQSLKMHKKIHTGEKSFVCDVCGSKFLRKQSLQIHLKIHTGEKLFACEFCDLSFALKGKLTEHLRTHTDEKKYSCEICDFKFLRRRDLARHSIIHTGKKPFSCEICTYKTFRESDLKRHIRIHTGEKPYVCEFCGVAFAVPQDLKVHLRTHTGEKPFPCEFCPMKFATKGTLIGHSRTHTGEKPFKCEFCDYKFSLKQQLKSHLRSHTGEKPFTCKYCDLTFSHKQNLKYHVRTHTGEKPHVCEICGAKFARRYRMVLHLNKHVGVQTFACLYCDLKFDLKCSLNDHLEIHTLEFPFCCEFCDSKFSLKLQLQGHLRAHALKKFLCEFCHKKFSRKDHLVTHLKTHTGEKAFSCNFCEKKFTQKIQMKCHIIRTHKADKSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292449;
90% Identity: -
80% Identity: -