Rlut013935.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:17384681-17386316[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6e-05 0.0017 19.7 1.5 1 23 114 136 114 136 0.96 2 13 0.01 0.67 11.5 2.4 1 23 142 164 142 164 0.98 3 13 4.6e-05 0.0031 18.9 1.7 1 23 170 192 170 192 0.98 4 13 0.00031 0.021 16.3 0.2 1 23 198 221 198 221 0.97 5 13 6.5e-05 0.0043 18.4 1.3 1 23 227 249 227 249 0.98 6 13 1.4e-05 0.00096 20.4 0.9 1 23 255 277 255 277 0.98 7 13 9.4e-06 0.00062 21.0 0.8 2 23 284 305 283 305 0.96 8 13 0.00019 0.013 16.9 1.4 1 23 311 333 311 333 0.97 9 13 0.016 1.1 10.9 0.1 1 23 339 361 339 361 0.97 10 13 0.056 3.7 9.2 0.7 1 23 367 389 367 389 0.98 11 13 0.0011 0.075 14.5 1.2 3 23 397 417 395 417 0.97 12 13 0.00051 0.034 15.6 0.4 2 23 424 445 423 445 0.97 13 13 8.5e-07 5.7e-05 24.3 0.6 1 23 451 473 451 473 0.98
Sequence Information
- Coding Sequence
- ATGAAAGAGAAGTTGAACTCAATAGAAGTTGCAATAAGGGCAAAAAGCAATGACCAGGAGTGCTTTGACCTTTCCCAAAAAACAGgaGATCCTCCTCcgaattgtaaaattaaaattgaacaaaacgACGATGTAATTATGTATCATTCCATAGAGGTTAAAGAGGAGCAAGCGGACCATTTCACGGGGGTGCAAAACATTTGGATCAGCGAAGGTGGAGTAATAAAACAGGAAGTTTCCAGTGAAGGAACTTGCGAAGAACGGGATCAGGTACCCCCGGAGTGTAAGTCAAAATCGGATTTAAGTGAACATTTATTACTTGGCATGATCGATGAACCACATACTTGCGAGATTTGTGGTTATAAAACTGTCAGGAGGGAGAACTTCCAGCGTCACATGGAAGCTCATGCGGATAAAAAACCGTTTGTATGTGAAATTTGCAGTTATCGAACCTTAAAAAAAAGTGACCTACATAAACACTTACGGATTCACACCGGGGTGAAGCCGTTCATGTGCAaactttgtgactataaaactGTGCGGAAAGACAGCCTAAAAGAACACTTACGAAGTCACACCGGCGAAAAGCCATTCAAGTGCGAAATTTGCGAGGTACGAACGGCGAGGAAAGGGGATTTACGCGCCCATTACTTGCGGATTCATTCCGGCGAGAAGCCGTTCatgtgtaaaatttgtgactacaggACAGCTAAAAAAAGTGACTTAGGCAAGCATTTAAAAACCCATACAGGTGATCggtcgtttaagtgtgaaatgtGCGATTATACGGCAGTGCAGAAAAGTAACTTATTGAGACACTTAAAGAATCACACTGACGAAAAACCGTGCGTGTGCGCGGTTTGTGGATATAGTACTGCAAGAAGCAGTAACCTCCAGGAACATTTGAAAACTCATACCGGCGAAAAGCCATTTTCGTGCGAACGGTGCGACTTTAAAACGGCGAGAAAAAGTAACCTCCAAACGCACTTGACGATTCATACGGGTGAGAGGCTGTTTGCGTGCGAAGTTTGCGATTATAAAGCCGCTTCGAACAGTATCCTCCAGACGCACTTGCGAATTCACACCGGCGAGAAGATATTCGAGTGTGAATTTTGTGATTTCACAGCCCCGcgcaaaaatattctaaaacagCACGTGAAAACTCATACCGACGTAAAAGCATTCGGGTGCCAACTCTGCAATTATAAAACCGCAAGGAAAAGCAGCTTACAGACGCATCTCTCGATGCACAAACGCGAAGAGTCGCTTACCTGTGAGATCTGTAAATATAAAGCAATATCGAAAAGTAGCCTGAAGGTGCACTTAAAAATTCACACCGGCGAAAAGTCGTTTGTCTGCGAGGTTTGTGATTACAGCACTGCAACGAAGAGCAACTTGCGAAGGCACTTAAACAGCCATAACAATGAAACAGCATTTCCAAGTGTTCTGCCCccgttaaataattttgaagttgtgAGAGTGAAAGTGGAGTGTGAAAACTTTCCATCAGATGATTTAATGGATCCCTTAGGTATGGAAGAGGGACGGTAG
- Protein Sequence
- MKEKLNSIEVAIRAKSNDQECFDLSQKTGDPPPNCKIKIEQNDDVIMYHSIEVKEEQADHFTGVQNIWISEGGVIKQEVSSEGTCEERDQVPPECKSKSDLSEHLLLGMIDEPHTCEICGYKTVRRENFQRHMEAHADKKPFVCEICSYRTLKKSDLHKHLRIHTGVKPFMCKLCDYKTVRKDSLKEHLRSHTGEKPFKCEICEVRTARKGDLRAHYLRIHSGEKPFMCKICDYRTAKKSDLGKHLKTHTGDRSFKCEMCDYTAVQKSNLLRHLKNHTDEKPCVCAVCGYSTARSSNLQEHLKTHTGEKPFSCERCDFKTARKSNLQTHLTIHTGERLFACEVCDYKAASNSILQTHLRIHTGEKIFECEFCDFTAPRKNILKQHVKTHTDVKAFGCQLCNYKTARKSSLQTHLSMHKREESLTCEICKYKAISKSSLKVHLKIHTGEKSFVCEVCDYSTATKSNLRRHLNSHNNETAFPSVLPPLNNFEVVRVKVECENFPSDDLMDPLGMEEGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927959;
- 90% Identity
- iTF_01292152;
- 80% Identity
- -