Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294036.1:66255788-66269349[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.5e-05 0.003 18.9 3.2 2 23 205 226 204 226 0.98

2 11 3.5e-06 0.00023 22.4 1.2 1 23 232 254 232 254 0.99

3 11 0.00024 0.016 16.6 4.6 1 23 262 284 262 284 0.99

4 11 0.00086 0.057 14.9 1.5 1 23 290 312 290 312 0.98

5 11 0.0023 0.16 13.5 0.4 1 23 324 346 324 346 0.96

6 11 1.8e-06 0.00012 23.3 2.8 1 23 352 374 352 374 0.96

7 11 2.8e-05 0.0019 19.5 0.5 1 23 380 402 380 402 0.99

8 11 1.5e-06 0.0001 23.5 0.6 1 23 408 430 408 430 0.98

9 11 0.0001 0.0067 17.8 1.5 2 23 437 458 436 458 0.97

10 11 5.7e-05 0.0038 18.6 0.1 1 23 464 486 464 486 0.99

11 11 1.1e-07 7e-06 27.2 0.5 1 23 492 514 492 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.5e-05	0.003	18.9	3.2	2	23	205	226	204	226	0.98
2	11	3.5e-06	0.00023	22.4	1.2	1	23	232	254	232	254	0.99
3	11	0.00024	0.016	16.6	4.6	1	23	262	284	262	284	0.99
4	11	0.00086	0.057	14.9	1.5	1	23	290	312	290	312	0.98
5	11	0.0023	0.16	13.5	0.4	1	23	324	346	324	346	0.96
6	11	1.8e-06	0.00012	23.3	2.8	1	23	352	374	352	374	0.96
7	11	2.8e-05	0.0019	19.5	0.5	1	23	380	402	380	402	0.99
8	11	1.5e-06	0.0001	23.5	0.6	1	23	408	430	408	430	0.98
9	11	0.0001	0.0067	17.8	1.5	2	23	437	458	436	458	0.97
10	11	5.7e-05	0.0038	18.6	0.1	1	23	464	486	464	486	0.99
11	11	1.1e-07	7e-06	27.2	0.5	1	23	492	514	492	514	0.98

Sequence Information

Coding Sequence: ATggacataaaaaataatcaaatgcAACAGCCTGCACAATTTGATATCAACAAAATATGCCGAGCATGCCTTACAGAAAAGGGAGAAATGCGCTCAGTTTTCTTAGTCGACGAATCCATTGGACAAGCCATCAGACTCGCTGAAATGATAATGGGATTTTCTTCGGTTCAGATTGAAAATGGTGATGGTTTGCCTAATCTCATTTGTCTTCAATGTATTCACCAAGTTAGCAGAGCATTTTCTTTCAAACAACTTTGTGAACAATCCGATTCCAACTTACGACAATACTTGGGAAAGCCATTAAATCCAAAACCTAAACAAGAAATAGAAGACACATCAAATGCGGATTTGTATTCAACGAGTTTGTTCTTGGATAACTTTGGTTTAGACGATTCTTCAAACGATAGTGATGATTCTTTTAAACAAGATTTTACTCTTTTAAGTCAAAGTACTTCTGATAATCCCACCGACGAGAAAGCTATTGCacaaaaacaacttttaaaagctgccaaattacaaaaatgtaaaatgacAAAAAAGAAACTTTTAGCAAAAGTTGGTGGTAAAGCAAattatttaggtgcgttgaaaaaattaaaacgaaatACTAATCAATGCAACGTTTGCAAAAAACAATTCATCAACTTAAAATCATTTCGTAAACATTTACGTACGCATATAGAAGATCGTCCGTATAAATGTAAACTTTGTCCAAGAGGTTTCacggaagaaaattatttaaacaatcaCATGCGCACGCACATGCCAGAAGATCAAAAACCATATCAATGTAAACTTTGCAGTAAGAGGTTTATTCATACAACTcttttaaacaaacatttgtTGAAACACAGTGGGGAGAAACCTTTTGTGTGTAAAATATGCAATAAGGGATGTTACGCCGAAAACAGTTTATTGAAGCACATGAAAATTCACGAAAAGAAAGAAGGGGATCCTGCATTACTTAAACACATCTGTGATTATTGCAAAAGTGAATTTCCTGATGCTAGTTCTCTAGATATTCACATTAAACAACATACAGGAGATCGTCCCTTCTTATGCAACATGTGTGGAAAATGTTTTCCTCAACGATTTAACCTCGAATTACATTTAAGAACCCATACAGGCGAACGTCCTTTTACGTGCGAAGTATGCAAAAATGGTTATGTATCGAAAGCTAGCTTAAAAATACACATGAGAACGCATACAAACGAAAGGCCATTTGTTTGTGATTTTTGTGGTAAAGCATTCCGACAATCAGGAGATCTGACCAGTCACAAACGGTTACATGGGACCGAAAAGCCGATCGAATGTTCTGTTTGTCAAAAAAGATTTACCACGGTTATGAAATTGAAATATCACATGCGTAACCATACTGGAGAGCGACCTTATGTGTGTACCGTTTGTGGACGAGGTTTTACAGTAAATACGATTCTTTTACGTCATATGCGCGTTCATTCAGGAGAAAGGCCGTACGTTTGTGTAACTTGCGGCAAAGCATTCTCGCAGTCAAGTACTCTCAACACACATATGAAGGTTCATGCACCATCGCCCAAATACAACACGCAAGAAACTCCATCAAGAATGCCAAAATTTTCTGCAGTCAACGAAGTCAAATTTCACAATACCAATGATCAGCAAAATAATCGCCTCATGCAACCTCAAGATAACAGAATGATGCAACCTGAACCACCTCGTATGATACAACAAGACGGTAATCGAATGCTATCAAACGACGGTTCGAGAATCTTAAATGATGGCCATTTATTAACTGATAATCGTGTTCTTCTTAACGATACAACCCGTCTTCACTTAGTAAACGTTAGTGAACCACCACGATTGTTAGTCAACGATAACACAAGACTGTTAACCAATGATAATCGGTTATTAACAAATGATAACACACGTTTGCTTGCCAATATGACGGACAACAATCGATTATTAACAAATGAtaatcgattattagccaatGAAAATGCCAGACATTTAGCGGTTATTGAAGGTTCGCGTATTCTAGCAGACAAATATTTAGCCAATTATGATCCGTATCACCGTGGACATCTTTAG
Protein Sequence: MDIKNNQMQQPAQFDINKICRACLTEKGEMRSVFLVDESIGQAIRLAEMIMGFSSVQIENGDGLPNLICLQCIHQVSRAFSFKQLCEQSDSNLRQYLGKPLNPKPKQEIEDTSNADLYSTSLFLDNFGLDDSSNDSDDSFKQDFTLLSQSTSDNPTDEKAIAQKQLLKAAKLQKCKMTKKKLLAKVGGKANYLGALKKLKRNTNQCNVCKKQFINLKSFRKHLRTHIEDRPYKCKLCPRGFTEENYLNNHMRTHMPEDQKPYQCKLCSKRFIHTTLLNKHLLKHSGEKPFVCKICNKGCYAENSLLKHMKIHEKKEGDPALLKHICDYCKSEFPDASSLDIHIKQHTGDRPFLCNMCGKCFPQRFNLELHLRTHTGERPFTCEVCKNGYVSKASLKIHMRTHTNERPFVCDFCGKAFRQSGDLTSHKRLHGTEKPIECSVCQKRFTTVMKLKYHMRNHTGERPYVCTVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPSPKYNTQETPSRMPKFSAVNEVKFHNTNDQQNNRLMQPQDNRMMQPEPPRMIQQDGNRMLSNDGSRILNDGHLLTDNRVLLNDTTRLHLVNVSEPPRLLVNDNTRLLTNDNRLLTNDNTRLLANMTDNNRLLTNDNRLLANENARHLAVIEGSRILADKYLANYDPYHRGHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00741130;
90% Identity: iTF_00399768;
80% Identity: -