Rlut015329.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:36426247-36427893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.2e-05 0.00083 20.6 0.3 1 23 89 111 89 111 0.97 2 16 0.00079 0.052 15.0 4.5 1 23 122 144 122 144 0.96 3 16 0.00017 0.011 17.1 1.0 1 23 150 172 150 172 0.98 4 16 0.0086 0.57 11.7 1.7 1 23 178 201 178 201 0.96 5 16 4.5e-06 0.0003 22.0 0.3 1 23 207 229 207 229 0.98 6 16 0.00065 0.043 15.3 1.6 1 23 235 257 235 257 0.97 7 16 0.0035 0.24 12.9 0.2 1 23 263 286 263 286 0.95 8 16 0.00044 0.029 15.8 0.5 1 23 292 314 292 314 0.98 9 16 0.0053 0.35 12.4 1.9 1 23 320 342 320 342 0.98 10 16 0.0011 0.07 14.6 3.0 1 23 348 370 348 370 0.96 11 16 0.0007 0.047 15.1 3.3 1 23 376 399 376 399 0.98 12 16 0.0091 0.6 11.6 0.6 1 23 404 427 404 427 0.96 13 16 1.6e-05 0.001 20.3 1.1 1 23 433 455 433 455 0.98 14 16 0.034 2.2 9.8 4.6 1 23 461 484 461 484 0.93 15 16 0.00012 0.0077 17.6 1.3 1 23 490 512 490 512 0.97 16 16 0.00067 0.045 15.2 1.2 1 23 518 540 518 540 0.96
Sequence Information
- Coding Sequence
- ATGGCACGAGTTTATTTGGAAGAGACTCTGCACTTAAGTGAAACTAGCAATATTTTGTCTGCGCCGTGCAATTTGATGATtaattcagaaattaaaaaagaacCGCAAGATATACAATTCAAATTGGAAAACTTGCATCATACATTTGACATCAAAGAAGAAACCCATTTTTTTCAATCAGAACTAAACGAAGAATGTGAACTACAACAATTCGATGTTTCTAAGGTAGAGAGAGTATGTAGCTTTGAAAGTTCCCAAGATATATTTGCTTGTGACGTTTGTGACTATAAGTCACCGACCAAAGGCAACTTGAAACGACATATAAAAGTTCATACTCGTTTGCATTCCATGGGTAAGAAACTATTTACTTGTCTGAATTGTGATTATAAATCATTTCGTAAAAGTAACTTGAAACGGCATAATAAAACCCATACGGGGGAAAAGCCATTTATATGTGCGATTTGTGAGCATAAATTTGCAGACAAAATCTACTTGGATCGGCATTTGAGAACGCATATAGGTAAACAATCATTCACATGTGGAATTTGCGGCTATAAATCAACAGGTAAAACCACCAAATTTGAACGACATATGAGAACccacaccggggaaaaaccgttcAATTGTGATATTTGTGGCTATAAATCAATAGACGAAGCCAGTTTGCGGCGGCATATGAGAACTCATACTAACGACAAACCGTTCGAATGTGAAATGTGTAACTATAAATCATTGCGAAAACTTAATTTAGAAAGGCATATGAGAACtcataccggggaaaaaccgttcaattgtgacatttgtgactacaaaGCTTTAGACCCGACCAATTTGAAAAGGCATATTATGAGAATACATATTGGCGCAAAACCATTCACttgcgaaatttgtgactataaatcaaTGGGCAAAACTAATTTGGAACGGCATGTATTAACCCACACAGCTGAAAAACCATTCGAGTGTGTAATATGTAACTATAATTGTTCAAGCGGGGAATTGTTAAAATACCATATGAAAAACCATTCCGGTGATATCCCGTATAACTGTACAGAGTGTAACtataaatcattaaaaaaatcgaatttgaAACGGCATGTACGTACCCATACAGGTGAAAAACCCTTCagttgtgaaatttgtgaccacAAATTTTTAGACAAAACCAGTTTGAATAAGCATTTGAAAACCCAACATATGGGCAAACCATTCACTTGTGtaatttgcgactataaatcaACAAGCAAAATCAAAGTGGAACGGCATATTATGCAAACTCATGCCGGGGTAAAGCCATATTTTTGTGGAATGTGTGACTACAAATCAAGAAACAAAGCCAACTTGGAACGACACGTAAGaactcatacaggtgaaaaACCGTTCGAGTGTGAACTATGTGATCATAAATGTTCTAGCAAGGAATCGTTACAATatcataatatcaaaaatcatgcCGTTGATATGCCGTTTACGtgtgaagtttgtgactataaatcatTACGAAAAACAAATTTAGAACGGCATATtagaactcatacaggcgaaaaaccgttcgCTTGTGATATATGTGGCTATAAATCTTTAGATAGGACCAATTTGAAGCGACATAAAAGAACTCATACAAGCAAAATCACGGATGAACGGTAG
- Protein Sequence
- MARVYLEETLHLSETSNILSAPCNLMINSEIKKEPQDIQFKLENLHHTFDIKEETHFFQSELNEECELQQFDVSKVERVCSFESSQDIFACDVCDYKSPTKGNLKRHIKVHTRLHSMGKKLFTCLNCDYKSFRKSNLKRHNKTHTGEKPFICAICEHKFADKIYLDRHLRTHIGKQSFTCGICGYKSTGKTTKFERHMRTHTGEKPFNCDICGYKSIDEASLRRHMRTHTNDKPFECEMCNYKSLRKLNLERHMRTHTGEKPFNCDICDYKALDPTNLKRHIMRIHIGAKPFTCEICDYKSMGKTNLERHVLTHTAEKPFECVICNYNCSSGELLKYHMKNHSGDIPYNCTECNYKSLKKSNLKRHVRTHTGEKPFSCEICDHKFLDKTSLNKHLKTQHMGKPFTCVICDYKSTSKIKVERHIMQTHAGVKPYFCGMCDYKSRNKANLERHVRTHTGEKPFECELCDHKCSSKESLQYHNIKNHAVDMPFTCEVCDYKSLRKTNLERHIRTHTGEKPFACDICGYKSLDRTNLKRHKRTHTSKITDER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -