Rlut028411.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294041.1:17428159-17429661[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.1e-06 0.00027 22.2 0.5 1 23 31 53 31 53 0.98 2 15 6.1e-05 0.0041 18.5 0.6 1 23 62 84 62 84 0.98 3 15 0.0047 0.31 12.5 1.1 1 23 118 140 118 140 0.97 4 15 0.035 2.3 9.8 0.3 1 23 146 168 146 168 0.97 5 15 3.4e-06 0.00023 22.4 1.1 1 23 174 196 174 196 0.97 6 15 4.5e-05 0.003 18.9 5.1 1 23 202 224 202 224 0.99 7 15 0.00034 0.023 16.1 0.5 1 23 230 252 230 252 0.98 8 15 3.4e-05 0.0022 19.3 1.1 1 23 276 298 276 298 0.97 9 15 0.0006 0.04 15.4 1.4 1 23 304 326 304 326 0.96 10 15 0.00013 0.0087 17.4 0.6 1 20 332 351 332 354 0.93 11 15 5.1e-05 0.0034 18.7 2.6 3 23 362 382 360 382 0.98 12 15 0.00088 0.059 14.8 3.7 1 23 388 410 388 410 0.99 13 15 0.0007 0.047 15.1 2.6 3 23 418 438 416 438 0.97 14 15 1.1e-06 7.1e-05 24.0 1.0 1 23 443 465 443 465 0.97 15 15 0.00041 0.028 15.9 0.3 3 23 473 494 471 494 0.95
Sequence Information
- Coding Sequence
- ATGCTGTCTCATGTAGAACAGTGCGACATTAAAATAGAAGGTGATGAGTCTAATAATGCAACGAAACTGTCAGGTATCGACGAGCTGCTTTTTACATGTGGAATTTGTTCAgttagttttaaaaatcaaattgatTTAACAACCCACATGCAAATGCACTcggaattttcttcaaaaaaatgtttcacCTGCGAAGTATGTCAAGTCAAGTTCACAGAAAAAGCAACTTTGAGAACCCACATGGGGACTCACACCGAAATAAGACGATATTCTTGTAAAATTTGCTCATCCAAATTTTTGTGCAACATTGATCTGAAGCACCATATGTTTTCACATACCGGGGAAAAATCTTACAAATGCGACTTTTGTTCATTATCATTTTTACGTAAAAGTGCCCTGGATAGGCACCGCTTAGGCCACACCGGAGAGCGAAGCTTTTTCTGCGACATCTGCTCTTCTACATTTTTAAGCAAAGCTTCCCTAGAAGGCCACATTATGCGGCACATTGGAATACGTTCGTTTGCTTGTTCAATTTGCCCGCTAAAATTTTACCGGAAAAACGAGTTGAACACCCACATGAAGACGCACATTGTAGAAAAAGCTTTCAAGTGTAAAATTTGCTTCAAAGTGTTCACAAGTAAGAGGAGGTTCAAGAGTCACGTTCGGACCCATGTACCCGAAAAAAACTTCAGTTGTGAAATTTGTTCTTCCACCTTCGCCCTTGAAGGTTACTTAAAAAGACACCTACAAACTCATTTCGATATAAAGCCGGTTAGTTGCAACATCTGCCTCTTTGAATGTATCCACATGAAGATTCCAAAATCGTTCGCATGCGAAACCTGCCCTGCGTCTTTTTCGACTAAAAATCACTTGGATCGTCATCAAATCAGTCACAatggagaaaaaccgttttgtTGTGACATTTGTGGATcgttgtttcaacaaaaatcttACTTGAAAGTCCACATGGTAGTTCATACCGGAGAAAAGCGATTTATATGTGGGCACTGCAACTTGAGGTTTGCACGTAAAAGCGACTTAAGAACTCACGTGCCGATCCATCTTGGAGTGAAGCCTTTCGGTTGTGAGCTTTGTCCATCCACGTTCCGCCacaaaaagaatttaaaacaGCATATGATAACTCACACCGGAGTGAAAGcattcaagtgtgaaatttgtcaaaataaatttGCTCTTAAGTGCACTTTGAAGAAACACATTCTGACTCATACCAAAGAGAAGTCTTTCGGTTGCGAAATGTGCGATTATAAGTGTTCCCAGAGAACTTCCCTAAGGAAGCATCTTTTAATCCATGGCGAGAAAACATTTAAGTGTAAAATCTGTCAAACTACATTTGCTCAAAAATCGGGTTTGAAAAGTCATATGTTGGGCCATCCCAAAATCAAGTCATTTGGATGTGAAGTTTGCTCTTCCGCTTTTACACGCAAAAGCGATTTGAATAGACATAACATGGTTGCTCATGGCAGGAAAAAGGAAAAGTAA
- Protein Sequence
- MLSHVEQCDIKIEGDESNNATKLSGIDELLFTCGICSVSFKNQIDLTTHMQMHSEFSSKKCFTCEVCQVKFTEKATLRTHMGTHTEIRRYSCKICSSKFLCNIDLKHHMFSHTGEKSYKCDFCSLSFLRKSALDRHRLGHTGERSFFCDICSSTFLSKASLEGHIMRHIGIRSFACSICPLKFYRKNELNTHMKTHIVEKAFKCKICFKVFTSKRRFKSHVRTHVPEKNFSCEICSSTFALEGYLKRHLQTHFDIKPVSCNICLFECIHMKIPKSFACETCPASFSTKNHLDRHQISHNGEKPFCCDICGSLFQQKSYLKVHMVVHTGEKRFICGHCNLRFARKSDLRTHVPIHLGVKPFGCELCPSTFRHKKNLKQHMITHTGVKAFKCEICQNKFALKCTLKKHILTHTKEKSFGCEMCDYKCSQRTSLRKHLLIHGEKTFKCKICQTTFAQKSGLKSHMLGHPKIKSFGCEVCSSAFTRKSDLNRHNMVAHGRKKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -