Basic Information

Insect: Rhagonycha lutea
Gene Symbol: su(Hw)
Assembly: GCA_958510855.1
Location: OY294036.1:27803434-27813920[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.4e-05 0.0049 18.2 1.9 2 23 189 211 189 211 0.94

2 13 0.29 19 6.9 1.2 1 23 242 265 242 265 0.91

3 13 0.14 9 8.0 0.1 1 23 271 293 271 293 0.94

4 13 8.1e-05 0.0054 18.1 0.7 1 20 299 318 299 320 0.95

5 13 1.2e-07 8.1e-06 27.0 0.8 1 23 331 353 331 353 0.98

6 13 9.8e-05 0.0066 17.8 2.0 1 23 363 385 363 385 0.98

7 13 2.6e-05 0.0018 19.6 0.2 1 23 391 413 391 413 0.98

8 13 8.3e-06 0.00055 21.2 0.6 1 23 419 441 419 441 0.99

9 13 0.00017 0.011 17.1 1.9 1 23 447 469 447 469 0.93

10 13 3.8e-05 0.0025 19.1 2.1 1 23 475 498 475 498 0.96

11 13 1.3e-05 0.00089 20.6 0.7 2 23 505 526 504 526 0.96

12 13 5.5e-07 3.7e-05 24.9 2.0 1 23 532 554 532 554 0.99

13 13 1.3e-05 0.0009 20.5 3.1 2 23 561 583 560 583 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.4e-05	0.0049	18.2	1.9	2	23	189	211	189	211	0.94
2	13	0.29	19	6.9	1.2	1	23	242	265	242	265	0.91
3	13	0.14	9	8.0	0.1	1	23	271	293	271	293	0.94
4	13	8.1e-05	0.0054	18.1	0.7	1	20	299	318	299	320	0.95
5	13	1.2e-07	8.1e-06	27.0	0.8	1	23	331	353	331	353	0.98
6	13	9.8e-05	0.0066	17.8	2.0	1	23	363	385	363	385	0.98
7	13	2.6e-05	0.0018	19.6	0.2	1	23	391	413	391	413	0.98
8	13	8.3e-06	0.00055	21.2	0.6	1	23	419	441	419	441	0.99
9	13	0.00017	0.011	17.1	1.9	1	23	447	469	447	469	0.93
10	13	3.8e-05	0.0025	19.1	2.1	1	23	475	498	475	498	0.96
11	13	1.3e-05	0.00089	20.6	0.7	2	23	505	526	504	526	0.96
12	13	5.5e-07	3.7e-05	24.9	2.0	1	23	532	554	532	554	0.99
13	13	1.3e-05	0.0009	20.5	3.1	2	23	561	583	560	583	0.94

Sequence Information

Coding Sequence: ATGGAAGGTGGAGAAAACATGTGCCAAACGATTGGCAAATTGGAGCCAGTAGAAATTGAAACAGAACTGGAAGACACAACAGTACTAAAAAACATGTCAATTATTGAAACGAGTTCCCATCAACAAATTATACTAAACCATTTACAATTAGTAGGCAATTCGGATGGCAACTTAGAAATTAATACAATCGATAACTTCACCACAGAAATGGTGCAACATATGCAAAATAATCATAACATGGATGAATTGCAAGTAGAAATTACTGTAGAACACAGTGACAATTATGACGAAGAACATGCGGAAACTTTCACTACggatcaaattttaattgttaacgAAGAAGATTTAGTTGAAGGTAATCACATTTTAGAAGATAATCAATTGATAGAGGAAGAGGAAAGTATACTACCGGAAAACGACGATGTTATGCTTACAGAAGAAGAAACTACATTGGACGAAGATACCGTCGAGAATGATATGTTTATAGAAGACGATTCCGAATTTATTGATGACCCAGATTACCAAGTTGAGAACGAAGAGGAAATGAAAGTCgaagaaattaattattgcGATATTTGTCAACGCACTTTTAAAACTGCTGCTaGTTTAAAACGTCACGTTACGGTATGCCACTCGGTGGAAGAAGACCAAGACGATCCATTGGCATTTGAATTGTGCTTATGTTGTGGAGAGCCGGTGGATTCGGCTCACACGACTGGCGAGTTCAAATGCGAATTATGTGATAAACTGTTTCTTTTTCAAAACAGTTTGGACAGACATAAGAGTTTGGAGCATTCAGAAGAAGGCAATTATAAATGTGTGGAATGCATTGGTTTATTTAACGTCAAGTCTGAATTAATAGAACATATGCAATCGCATCCAATCAATAAATTGTACCCATGTCGAATATGTAATCGCGAATTTACACGTAAATATCATTTAGATCGGCATGTAGCACAAACTGGATGTGATGGAACCCCGCGCAACGAATTTCAGTGCCAGGTTTGTGAAAAAGTATTTTCTCGGAAGGATAATTTGAGAGACCATCTTAGAGCTCACGCGGGACAAGCTAAGAAAAAGAAGATATTTCattgtaaatattgtaataaagaaTTTCGTGGTTCAGCTCCCCTTTCTGTTCACTTAAGAACCCACACCGGAGAAAAGCCGTACCCTTGTGACTTATGTCCGAAGCGCTTCCCTTCAAGCGGTGCGATTAGAAAACACAGAAGAATGCATACCGGAGAAAAACCATATCAATGCCCCAAGTGTGACAATCGATTTGCTGCAAAGGAAACTTTAAATCGGCACGTACGCACTCACACAGGTCAAAAACCACACGCCTGTCAGTTTTGTGGAAAAACTTTCATCCAAGCGGCGCAGTTACGTGCTCATGTGTTTCACCATACAGGAGAAAACGCATACACTTGCCCACACTGCAATCGTGCCTTTAATCGGAGAGCACGACTTACCATGCACATTAAATTTGTTCACGAAGGTGCCAAACCGTTGGAATGTGATCAGTGCGATAAAACTTTCTTTCGCAAGGAAGACCTCGCACGTCACACTATGTTACATTCTGGCGTTAAacCTTTTCAGTGTGAAGTTTGTCATAAATCGTTTGCAGTCAAATCGTCCTTAAAGTTACACATGTTAACTCATCGTAAGGAACAGCCTTGCAGTTGTGATGAATGCGGACGTGCTTTCATTCGTCAGGATTGTTTACTACGTCACATGCGGGCGAAACATCGTGACGTTTTGGAAGATATTTTAGCGGGCGCTGAAAAGAAGAAATTACAGCAGCAACTGTTAAATGCGGCGTCGAATGCCGCCAAAAACGGGTTAAAAGAActgtctgaaaataaaatttggaacgAACTTACCTTGACAGATTCTGTAAAAGAGTTGTTGACTTTATTAGTGGACGAGACGACTTTGCAATCGTTTGGTTGGCCCGATGCGCCTGTCGATAAGTTGCTCGATTCCGTAATTAAAAGGTGTGGTCATAAACCGGCTTCGGAAGAAGACTTTGACTATATTGGACGTATGCGTGAGAATGTGAAGTTGTTATTTACTGTTGTTATCGATGATGAAGCTGTGAAATCGTTATTGAATAATCAAACGGTGGACGAAGTTATTGTACACGTATTGAAATTAGCAAATAGCGAGTAA
Protein Sequence: MEGGENMCQTIGKLEPVEIETELEDTTVLKNMSIIETSSHQQIILNHLQLVGNSDGNLEINTIDNFTTEMVQHMQNNHNMDELQVEITVEHSDNYDEEHAETFTTDQILIVNEEDLVEGNHILEDNQLIEEEESILPENDDVMLTEEETTLDEDTVENDMFIEDDSEFIDDPDYQVENEEEMKVEEINYCDICQRTFKTAASLKRHVTVCHSVEEDQDDPLAFELCLCCGEPVDSAHTTGEFKCELCDKLFLFQNSLDRHKSLEHSEEGNYKCVECIGLFNVKSELIEHMQSHPINKLYPCRICNREFTRKYHLDRHVAQTGCDGTPRNEFQCQVCEKVFSRKDNLRDHLRAHAGQAKKKKIFHCKYCNKEFRGSAPLSVHLRTHTGEKPYPCDLCPKRFPSSGAIRKHRRMHTGEKPYQCPKCDNRFAAKETLNRHVRTHTGQKPHACQFCGKTFIQAAQLRAHVFHHTGENAYTCPHCNRAFNRRARLTMHIKFVHEGAKPLECDQCDKTFFRKEDLARHTMLHSGVKPFQCEVCHKSFAVKSSLKLHMLTHRKEQPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDILAGAEKKKLQQQLLNAASNAAKNGLKELSENKIWNELTLTDSVKELLTLLVDETTLQSFGWPDAPVDKLLDSVIKRCGHKPASEEDFDYIGRMRENVKLLFTVVIDDEAVKSLLNNQTVDEVIVHVLKLANSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00270147;
90% Identity: iTF_01292085;
80% Identity: -