Rlut013575.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:13791725-13793509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8e-05 0.0012 20.2 3.9 1 23 82 104 82 104 0.98 2 17 0.00033 0.022 16.2 2.0 3 23 112 132 110 132 0.97 3 17 1.4 96 4.7 0.1 10 22 139 151 136 151 0.84 4 17 0.00016 0.01 17.2 1.8 1 23 158 180 158 180 0.96 5 17 0.00017 0.011 17.1 2.0 1 23 189 211 189 211 0.97 6 17 0.0031 0.21 13.1 0.5 3 23 219 239 217 239 0.98 7 17 1.3e-05 0.00087 20.6 0.4 1 23 253 275 253 275 0.97 8 17 8.7e-05 0.0058 18.0 2.9 1 23 281 303 281 303 0.98 9 17 0.0017 0.11 13.9 1.4 1 23 309 331 309 331 0.98 10 17 0.0071 0.47 12.0 0.8 3 23 339 359 337 359 0.98 11 17 5.8e-05 0.0039 18.5 0.9 1 23 374 396 374 396 0.99 12 17 0.00014 0.009 17.4 1.4 1 23 402 424 402 424 0.97 13 17 2.2e-05 0.0014 19.9 1.8 1 23 430 452 430 452 0.98 14 17 2e-05 0.0014 20.0 0.7 3 23 459 479 457 479 0.97 15 17 0.00098 0.065 14.7 0.4 3 23 487 507 485 507 0.98 16 17 7e-05 0.0047 18.3 0.8 2 23 515 536 514 536 0.96 17 17 0.00046 0.03 15.7 0.7 1 23 542 564 542 564 0.98
Sequence Information
- Coding Sequence
- atggaAAATAAGAAGAGCATAACTTTGGCAGAAGTTGAAATAAAAGAAGAGAATTTTGAATTAGCTAATCAGTCAGAGAACGAAAATTTTGATGGGTTAATTAAGCTCGAGGAATTCGAATGTGAATCGGAAGATTTTAAGTTTTCCATAGACGTCAAACAAGAGGAAGAAACGACCGATGGTCAAACCGCTCTGGTTGGAAGTAATGCACTGGAACCTATAAAAATTAGAATCGAAAAATTGTTTGAGTGCAAAACTTGTAATTACAGAACTGCTTACAAAAGTCACTTGCAACGCCACATACGAATTCATTCGGGTGAAAAGCCGTTTGGAtgcgaaatttgtgattataagtCTACAGACAAAAGCTGCTTACAAAGACATGTTCGACTTCACGGAGACAGTGATTGTAAAACTGCGGACAAGTCTCATTTAAAAGCCCATTTGCGGGTTCTTACAGGTGAGGAGCCGTTtgcgtgtgaaatttgtggatTGACGACTGCATCGAAATgtaatttacaaaaacatttgaaatttcaCCGAAAAATTGACTTGGAGAAACGGTTTGCATGTAGAGTGTGTAATTATAGTGGTTCGGATAATTGCAGCTTACAACGGCATATAAGGACTCACACGGGTGAGAAACCttttggttgtgagatttgcGAATTCAGATCAGCGTTAAAAAGCAATCTAACTAAACACTTGAAAATCCATCAATGTAGGGAACGTGTGAAAATTAAACGTGAAAAGAAATTCTTTTGTGGAATCTGCGGATATGGAACATCGACCAACACAAATTTATTGCGACACCTAAGAGTTCATTCGAATGAAAAACCGTTTTCTTGTGATAGCTGCAGTTACAAATGCGCAGATAAAAGTAGTTTACGAAGACACATAAGAATTCACACGGGGGAGAAACCATTTGAGTGTGGAATCTGCAGTTACAAATGTGGAGATAGCGGTAGTTTCAGGCGACATATACAGCTACACTCGGGTGAAAAGCCATTCGGATGTGAGATTTGCAGTTTTAGAACGGCgctaaaaagtaatttatacaAACATGTAAAAACTCATGAACCGAAGGACCACGAAGTGAAAATCGAACGTGAAAAGATTTACGTATGCGAAATTTGTGGGTATCGAACTGCAATTAGTACGAATCTACACCGCCACTTACGAATGCACTTGGGCCAGAAACCGTTCTCGTGTCAAATTTGCAATTATAAGTCGACCGACAAGAGCAGTTTGATACGGCACGAGAAACTTCACAGCGACGTGAAATCTTTTACGTGTCagatttgcgactacaaatccAACGATAGGAGCAGCTTAAAGAAACACTTAAAGATTCACGGAGAAAAGACCCTGGCATGCGAAATTTGCGATTTTAAAACTGTGAGCAAAAATAATCTACAGCGCCACTTGAGAACTCACACGGGGGAGAAACCGTTCGGGTGTGATTTGTGCAGTTACCGGAGCGCCGATAAGAGCAGTCTGATGAAACACATAAAAGTTCACACTCacgatcaaaattttcttacGTGCCAAGTTTGTAACAAGCAATTTAGCGAAAAAAGCAGCTTAGACAGGCATGCGAAAATCCACACAGGAGATAAATCTTTCGAGTGCAAGATTTGCAGCTTTAGGTCCATtgaaagtggtaatttgaagcGGCATTTGAAAATTCATAACAGAAAcgtaaagtaa
- Protein Sequence
- MENKKSITLAEVEIKEENFELANQSENENFDGLIKLEEFECESEDFKFSIDVKQEEETTDGQTALVGSNALEPIKIRIEKLFECKTCNYRTAYKSHLQRHIRIHSGEKPFGCEICDYKSTDKSCLQRHVRLHGDSDCKTADKSHLKAHLRVLTGEEPFACEICGLTTASKCNLQKHLKFHRKIDLEKRFACRVCNYSGSDNCSLQRHIRTHTGEKPFGCEICEFRSALKSNLTKHLKIHQCRERVKIKREKKFFCGICGYGTSTNTNLLRHLRVHSNEKPFSCDSCSYKCADKSSLRRHIRIHTGEKPFECGICSYKCGDSGSFRRHIQLHSGEKPFGCEICSFRTALKSNLYKHVKTHEPKDHEVKIEREKIYVCEICGYRTAISTNLHRHLRMHLGQKPFSCQICNYKSTDKSSLIRHEKLHSDVKSFTCQICDYKSNDRSSLKKHLKIHGEKTLACEICDFKTVSKNNLQRHLRTHTGEKPFGCDLCSYRSADKSSLMKHIKVHTHDQNFLTCQVCNKQFSEKSSLDRHAKIHTGDKSFECKICSFRSIESGNLKRHLKIHNRNVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -