Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:64475343-64476923[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0017 0.11 13.9 0.2 1 23 41 63 41 63 0.97

2 17 1.7e-05 0.0011 20.3 0.4 1 23 69 91 69 91 0.98

3 17 0.00032 0.021 16.2 2.8 1 23 97 119 97 119 0.97

4 17 0.0015 0.1 14.1 7.0 1 23 125 148 125 148 0.97

5 17 2.6e-05 0.0017 19.6 2.6 1 23 154 176 154 176 0.98

6 17 5.7e-06 0.00038 21.7 2.3 1 23 182 204 182 204 0.98

7 17 0.0045 0.3 12.6 3.8 3 23 212 232 210 232 0.98

8 17 2.4e-05 0.0016 19.8 0.9 1 23 238 261 238 261 0.96

9 17 0.00013 0.0088 17.4 2.1 1 23 267 289 267 289 0.98

10 17 7.9e-05 0.0053 18.1 4.6 1 23 295 317 295 317 0.98

11 17 3.5e-05 0.0023 19.3 1.5 1 23 323 345 323 345 0.95

12 17 0.0018 0.12 13.9 1.1 1 23 361 383 361 383 0.98

13 17 2e-05 0.0013 20.0 2.1 1 23 389 411 389 411 0.99

14 17 0.00049 0.033 15.6 4.2 1 23 417 439 417 439 0.97

15 17 0.002 0.13 13.7 4.7 1 23 445 467 445 467 0.98

16 17 0.00069 0.046 15.2 3.9 1 23 473 495 473 495 0.98

17 17 0.00012 0.008 17.6 1.2 1 23 501 523 501 523 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0017	0.11	13.9	0.2	1	23	41	63	41	63	0.97
2	17	1.7e-05	0.0011	20.3	0.4	1	23	69	91	69	91	0.98
3	17	0.00032	0.021	16.2	2.8	1	23	97	119	97	119	0.97
4	17	0.0015	0.1	14.1	7.0	1	23	125	148	125	148	0.97
5	17	2.6e-05	0.0017	19.6	2.6	1	23	154	176	154	176	0.98
6	17	5.7e-06	0.00038	21.7	2.3	1	23	182	204	182	204	0.98
7	17	0.0045	0.3	12.6	3.8	3	23	212	232	210	232	0.98
8	17	2.4e-05	0.0016	19.8	0.9	1	23	238	261	238	261	0.96
9	17	0.00013	0.0088	17.4	2.1	1	23	267	289	267	289	0.98
10	17	7.9e-05	0.0053	18.1	4.6	1	23	295	317	295	317	0.98
11	17	3.5e-05	0.0023	19.3	1.5	1	23	323	345	323	345	0.95
12	17	0.0018	0.12	13.9	1.1	1	23	361	383	361	383	0.98
13	17	2e-05	0.0013	20.0	2.1	1	23	389	411	389	411	0.99
14	17	0.00049	0.033	15.6	4.2	1	23	417	439	417	439	0.97
15	17	0.002	0.13	13.7	4.7	1	23	445	467	445	467	0.98
16	17	0.00069	0.046	15.2	3.9	1	23	473	495	473	495	0.98
17	17	0.00012	0.008	17.6	1.2	1	23	501	523	501	523	0.97

Sequence Information

Coding Sequence: ATGGAGGAGGGCagcaatgaaattaaaatggaaGAGGTGGATATTAAGGTAGAAGATTTACATTATCCCCTCGACATTAAAGAAGAGCCTCCGACGACTCCCGAATTTCAACTGGAACAGTTTGAATGTGAGGTATGCGACatcatatttttcaataaattgcaaTTAGAAGAGCACTCAAAAATTCATCAAATCGCAAAGCAATTTTCGTGTACAATTTGTGGTAGTATTTTTTCCACTAAAGCATCGTGGAGGAGGCATTTACAAATTCATTCTGGGGTCAAACCGTTTGCGTGTGAACTTTGCGAATATAAATGTAccctaaaacaaaatttggaacGACACTTGCGGACTCATACCGGCGAGAAGCCATTCGAATGCCAAATTTGCGATTTTAAATGCTCATATTCGTCTAATTTGAAAACTCACCACATGAAATTTCATATAGGTGAGAAGGGCTTTACCTGTGATATTTGCGATTATGAAACCTttcgaaaagaaaatttgaaacgtCATTTCCGAACTCAcaccggcgaaaaaccgtttagCTGTCAAATTTGCCACATTAAATGTTCGGATCCTTCGGCTTTGAAAGCGCACATGCAAACTCATACTGTTGAGAAAAGTTTTGGATGTGAAGTTTGCGATTACAAAAGTTCTCGAAAACAATGTCTCCAACGCCATAAACAGACCCATTCCGCTGATAAACCATTCAAGTGTAAAAAGTGCAATGTTCAATTTTCGGATTCCGCAGCTTTAAAAACTCATATCATGCAAACTCATGCTGGTGTGAAAAAGTTTTCCTGTGACATATGCGAATATAGAAGTCCCCGAAAAGAATGCTTGATTCGTCATTTACGaactcataccggcgagaaaccatttGAGTGTGAAAAGTGCAAATTTAAATGTTCGGATCCTTCGTATTTGAAAACACACATGAAATCTCATTCGGGTGAGAAAGCTTTTGCTTGTGAAATCTGTGATTATAAAAGTTTTCGAAAAGATAATTTGGAACGTCACTTTCGGACTCATCTTGGTGACAAACCACTGAAGGAACAAATCGCTGCCACCAAACCATTTTCGTGCACAATGTGCAGTAGCACATTTTCCATTAAGGCATCCTGGAGAAGGCATTTAAAAGTACACAGCGATGAGAAAATGTTCACATGCGAAGTCTGCGATTATAAGAGTTCCCGAAAAGAAAGTTTGACCCGCCATTCAAGAACgcatactggcgagaaaccgtttcaGTGCACAATATGCAACTTTAGATGTTCAGATTCCTCGTATTTGAAGATTCATGTGAAATTCCATACCGATAAGAAAGATTTTTCTTGTGTAGTTTGTGATTATAAAAGCTGCCGGAAAGAAAATTACGAGCGTCACTTCCGaactcataccggcgagaaGCCTTTCAAGTGCCTAATTTGCGATTTTAAATGTACCGATTCGTCATCTTTGAAAACACATTCGAAAATTCACGGTGCAGTCAAAAACTTTTCTTGCGAACTTTGCGATTATAAAAGTTCACGAAAGGATAACTGGAAACGGCATTTAGGAACTCACAAAGGCGAATAG
Protein Sequence: MEEGSNEIKMEEVDIKVEDLHYPLDIKEEPPTTPEFQLEQFECEVCDIIFFNKLQLEEHSKIHQIAKQFSCTICGSIFSTKASWRRHLQIHSGVKPFACELCEYKCTLKQNLERHLRTHTGEKPFECQICDFKCSYSSNLKTHHMKFHIGEKGFTCDICDYETFRKENLKRHFRTHTGEKPFSCQICHIKCSDPSALKAHMQTHTVEKSFGCEVCDYKSSRKQCLQRHKQTHSADKPFKCKKCNVQFSDSAALKTHIMQTHAGVKKFSCDICEYRSPRKECLIRHLRTHTGEKPFECEKCKFKCSDPSYLKTHMKSHSGEKAFACEICDYKSFRKDNLERHFRTHLGDKPLKEQIAATKPFSCTMCSSTFSIKASWRRHLKVHSDEKMFTCEVCDYKSSRKESLTRHSRTHTGEKPFQCTICNFRCSDSSYLKIHVKFHTDKKDFSCVVCDYKSCRKENYERHFRTHTGEKPFKCLICDFKCTDSSSLKTHSKIHGAVKNFSCELCDYKSSRKDNWKRHLGTHKGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -