Rlut027071.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294040.1:42944093-42947142[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.15 10 7.8 0.2 2 23 135 155 134 155 0.94 2 17 1e-05 0.00067 20.9 0.6 3 23 162 182 161 182 0.98 3 17 0.00017 0.011 17.1 3.2 1 23 187 209 187 209 0.98 4 17 6.1e-05 0.0041 18.5 0.2 2 23 218 239 217 239 0.97 5 17 9.3e-07 6.2e-05 24.2 0.9 1 23 245 267 245 267 0.96 6 17 4.1e-05 0.0027 19.0 0.9 1 23 273 296 273 296 0.97 7 17 1.5 1e+02 4.6 3.2 1 22 410 431 410 434 0.89 8 17 5.1e-05 0.0034 18.7 0.9 3 23 442 461 441 461 0.98 9 17 4.3e-06 0.00028 22.1 0.1 2 23 467 488 466 488 0.96 10 17 9.8e-06 0.00065 21.0 2.6 1 23 493 515 493 515 0.99 11 17 2.4 1.6e+02 4.0 1.0 1 20 572 591 572 592 0.83 12 17 0.011 0.73 11.4 3.4 2 23 603 623 603 623 0.97 13 17 0.0005 0.033 15.6 0.4 2 23 629 650 628 650 0.97 14 17 1.2e-05 0.00081 20.7 1.5 1 23 655 677 655 677 0.99 15 17 3.4e-06 0.00023 22.4 0.5 2 23 686 707 685 707 0.97 16 17 6.8e-07 4.5e-05 24.6 1.0 1 23 713 735 713 735 0.98 17 17 5.1e-06 0.00034 21.9 1.9 1 23 741 764 741 764 0.98
Sequence Information
- Coding Sequence
- atggaaATGGAGTGCCGTACGTGCTTAAAAATTTCCGATAATTTACTGGACTTAAATTCCGACGATTTACCACTGAAAATCGAGTCGATTTCGGCGGTGCAGATTTTAGTGAACGACAGGTTTCCATCAAAAATATGTAAAGAATGCGCAAGAAACGTGCACCTTTTGTACGATTTTCGTCGAATTGTTATAAGGAGTAACGAAATTTTGCTTCGACGCCTTGCTAAAGAGGAGGAAGTCGGTGATACAGCTGATGATATAAAAGAGGAAATTGTGACTGAAGATTCGTGGGGTTTGGAAAAAGAGGAAAACGATAAATTGGACCATTGCGATTTTACGTCTTCTGGGGACGAGTTATGGAAGAATCACAAGGAGAGCAAGTCGGGCAAGGTTGAATCCATAGTATGTAATTATTGTGGAAAACTAATCGCTAAGTATAATTTGAGCCAGCACCTTTCGACTCATACAGGAGCTCCGGTGTTGTGTAAAGTTTGCGGAAAACAGTTTAAAAATTGGGGGTCGTTGAGAGGGCATTTACGGAACCATAAGGGGATTCGTCACCAGTGTGCAACTTGCGGAAAAATTTATACAAACCGAAAGAGCTACACGGATCACATAAAGAGACACAAACTCGGAGATGTTAAGACTGTGGAGTGTCCGACATGTGGAAAGCTATTTTACGATAAAAAAGTGTTGGTTAAACATATAAGGAGTCACACAGGCGAACGACCCTACCTTTGCGAATACTGTAACAAGGGGTTTTCGAGCAACAGCGCCCTAAAAACGCACATACGACAGCACACGAAGGAAAAACCGTACTCTTGCGATTATTGTGATGTGGCCTACACGCAAAAGGTTTCCCTCACAACGCATCTAAAGTCGAAACATTCGGAGAAAATCGTTGAACAGAGCAACCTTGAAATTTTATTGGATGCGAGGTTACCGTGTAAAATATGCGAAGAGTGCGTAAGGAACGTGCACCTGCTGTATGATTTCCGCGACATTATCATCAAGAGTAACGTCATTTTGCTGCGAGATTGTGTCAAAGACGATCCCGACTCGCAAAGCGAAGAAGTGGTAGAGGTTAAAGGCACCGAAGCTGACGGCGTAAACCTAGAACCGAAAGTTGAACTCGTGACGTTAGATTCGTGGATCGTAGATGATTCACCGGACGAAGGGGAAGAGAGTGCAAAGAAATGGAACGTTAAATTGGGAAAAAGTAAAGTTTATCAGTGTCATCAGTGCAGTTTTTCCACTTCCGTGTACAATTTGTGGAGGAATCACAATAGGAGCAGTACGCATAAAGAGGCCGAGAAGGCAGCTTGTGAGGTGTGCGGGAAAGTGGTTACAAAGCACAACTTAAAGAATCACATGCGGGTGCATACAGAAGATCCGGTCTCGTGCGAATATTGCGGAAAGGTGTTTAAAAATGCGGGGTCGTTGCGGGGGCACATTTCGGTCCACGAGGGTCACCTCTTTCAGTGTAAGGTGTGCGGGAAAGTATACAAAAACAGGAAAGGTTATACGGACCACAGGAGGCGACATAAACCCGGCGACGCCAAGTACAAATCGGACGAATCGAATTTAAAGGTGAAACTTGAAAGCGTTACGGTGGAAGCCGTCGCTTTGGACGAAATGGAAAGCGAGGATTCCGACGACCAAGAAGAAAACGAAAGTTGCGGTGAAGAGGGCAGTACCGGTGAAAAAATTACTTATAATTGCCAGAAATGTGACTTTACAACTTCGGCTTATAATCTGTGGCGGAATCATAAAAGGTGCAAGTCTCACATAGGTGTGGAGAAGGCCGTGTGTAACATTTGCGGAAAAATGGTGAGAAAAACTCACATTTCGCATCACATCCGTACCCATACTGAAGCACCGGTGACGTGCAAATTTTGTGACAAGCAGTTTAAGAATGTGGGGTCCTTAAGGGGGCACCTGCTGATCCACAAGGGAATTAATTATCAGTGTACGACTTGCGGAAAAGTTTACGAGAACAGAAAAGGTTATTCGGATCACATGCGAAGGCATAAgcTGGGCGACGTAAAAACTGTGGAGTGCGCATTATGCGGAAAAATGTTTTACGATAAGCAAACATTGACGAAACATATTCGGAGTCATACAGGCGAGCGACCGTATCCATGTGAGTACTGCAAGAAAGGATTTTCCAGTAGCAACGCCCTAAAAACTCATATAAGGAGGCACACAAACGAAAAGCCGTTTACTTGTGATCATTGTGATATGGCTTTTCCACAGAGGGTCTCGCTCAGGAATCATTTGAGAACGAAACATGCGGATCAAGTTGTGCAGGACAATTCGGCATAa
- Protein Sequence
- MEMECRTCLKISDNLLDLNSDDLPLKIESISAVQILVNDRFPSKICKECARNVHLLYDFRRIVIRSNEILLRRLAKEEEVGDTADDIKEEIVTEDSWGLEKEENDKLDHCDFTSSGDELWKNHKESKSGKVESIVCNYCGKLIAKYNLSQHLSTHTGAPVLCKVCGKQFKNWGSLRGHLRNHKGIRHQCATCGKIYTNRKSYTDHIKRHKLGDVKTVECPTCGKLFYDKKVLVKHIRSHTGERPYLCEYCNKGFSSNSALKTHIRQHTKEKPYSCDYCDVAYTQKVSLTTHLKSKHSEKIVEQSNLEILLDARLPCKICEECVRNVHLLYDFRDIIIKSNVILLRDCVKDDPDSQSEEVVEVKGTEADGVNLEPKVELVTLDSWIVDDSPDEGEESAKKWNVKLGKSKVYQCHQCSFSTSVYNLWRNHNRSSTHKEAEKAACEVCGKVVTKHNLKNHMRVHTEDPVSCEYCGKVFKNAGSLRGHISVHEGHLFQCKVCGKVYKNRKGYTDHRRRHKPGDAKYKSDESNLKVKLESVTVEAVALDEMESEDSDDQEENESCGEEGSTGEKITYNCQKCDFTTSAYNLWRNHKRCKSHIGVEKAVCNICGKMVRKTHISHHIRTHTEAPVTCKFCDKQFKNVGSLRGHLLIHKGINYQCTTCGKVYENRKGYSDHMRRHKLGDVKTVECALCGKMFYDKQTLTKHIRSHTGERPYPCEYCKKGFSSSNALKTHIRRHTNEKPFTCDHCDMAFPQRVSLRNHLRTKHADQVVQDNSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -