Rlut013332.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:11256061-11262681[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.6e-05 0.0024 19.2 0.8 1 23 88 110 88 110 0.98 2 17 0.00014 0.009 17.4 4.0 1 23 116 139 116 139 0.96 3 17 0.00075 0.05 15.0 0.4 2 23 146 168 145 168 0.94 4 17 0.019 1.3 10.6 0.1 3 23 176 197 174 197 0.93 5 17 4.2e-06 0.00028 22.1 0.8 2 23 202 223 201 223 0.97 6 17 0.00018 0.012 17.0 2.4 2 23 230 251 229 251 0.97 7 17 5.1e-05 0.0034 18.7 1.4 1 23 257 279 257 279 0.97 8 17 8e-08 5.3e-06 27.5 1.3 1 23 364 386 364 386 0.98 9 17 1.9e-05 0.0013 20.0 1.0 1 23 392 415 392 415 0.96 10 17 0.0012 0.08 14.4 0.9 3 23 423 444 421 444 0.96 11 17 0.00054 0.036 15.5 1.2 3 23 451 472 450 473 0.97 12 17 2.1e-05 0.0014 20.0 1.4 2 23 477 498 476 498 0.97 13 17 8.3e-06 0.00056 21.2 0.3 2 23 505 526 504 526 0.97 14 17 8.6e-05 0.0057 18.0 1.9 1 23 532 554 532 554 0.96 15 17 2.5e-05 0.0017 19.7 4.7 1 23 560 582 560 582 0.98 16 17 9.5e-07 6.3e-05 24.2 1.6 1 23 588 610 588 610 0.97 17 17 0.044 3 9.5 3.7 1 23 616 638 616 638 0.95
Sequence Information
- Coding Sequence
- ATGGCCATGAGTTCAAATTGTCTGTTGCGTGTGAAGATTCAGCCCGAGAACGACGATAACTCACTTGGATTTGCTTTCCAAAATTCCAATACCACGATAATTAAATCCGAATTAGTATCGATTGATCTCGAAGAATGGGTTAGAAATTTGGAACAAGTTCGGGAACCCAATTTCATTGTCACTTGTATAGTTTGTAACCGACTGTTCATGGTGAAGGAATTAAATCGACACGTTAAATTGCATGCTGAGGTACCACAAGAGTTCAAATGCGATGTTTGTGGAAAAATATATTCCGCAATGAAAAATCTTAGACGGCACAGGAAAGGACACGATGCGCAAAGAACGCATGcgtgtgaaatttgttttaaaaagtttacttaCGCTCACTTATTAAGAGACCACATGAACACTACCCATAGCGCGGAAAAATCATGGATCTGTGAGTTTTGTCAGCGTTCgtttaaaattaagaaagcaTTAATTACTCACATTCGCGGTCGGCACTCGAAAGGAGGACAGTATGGATGCGATCTTTGTGGTAAAACGTTTGCTATTCCTTCCATATTGAAACAGCACTATCAAGGTTCTCATTATGTGAGGTCAAAATGCCCAATCTGCAATGAAGTATTTTCGAGCTATTATTATTTGCAAAAGCATAAAAAGATTCATAAGGAACCTGTTCATATTGTGTGTTCAATTTGTAACAAAGTCTTCGATCACACGACTTTGTTTAAACGACATTTCAGAGTTCATGGCGAGAAACCCAAATATATGTGTGAATTGTGCGGAAAACATTTTACTTCCGGCTCTAGTTTGAGAGACCATAAGTTGATTCATTCTGGCACTAGACCGTTGCTGGTGAATATTCAACCCGAGAACGACGATAACTCACTTGGACTTGTTATTCAAAATTCCAATACTACGTTGATTAAATCTGAATTAGTGTTAATTGATCTCGAAGAATGGGTTAGAAATTTGGAACAAGTTCGGGAACCAAATTTCATTGTCACTTGTATAGTTTGCAACCGACTGTTCATGGTGAAGGAATTAAATCGACACGTCAAATTGCATGCTGAGGTACCACTTGATTTCAAATGTGATGTTTGTGGAAAAGTGTTCGTGACGAAGAGAAACCTGACGCGTCACAGGAAAGGACACTATGCCGAAAGACCGCATGCGTGTGAAATATGTTATAAAACGTTTACTTACGCTCAGTTATTAACGGACCACATGAACACTGTCCATAGCGTGGATAAATCATGGTTCTGCGAGTTTTGCCAGCtttcgtttaaaattaaaaaaggattAACTGCTCACATTCGTCGTCGGCACTCGAAAGCACAGCATGGATGCGATCTTTGTAGTAAAACGTTTACTATTCCGTCCTATTTGAAACAGCACTATCAAGTTTCTCATCATATGGAGTCAAAATGTTCAGTCTGCAATGAAGTATtttcgaattattattatttgcaaaaGCATAAAAAGATTCATAAGGAACCTGTTCGAATTGAGTGTTCAATTTGTAACAAAGTCTTCGATGATAAGACTTTGCTTAAATGGCATTTTAGAGTTCATGGAGAGAAACCCAAATATATGTGTGAATTGTGCGGAAAACACTTTACTTCCGGTTCCAGTTTGAGAGACCACCAATTCCTTCATTCTGGCACTAGACCGTTCGAATGCCATGATTGTGGTAAAAAGTTTCATAACAAAAATACTTTACGGACTCATGTTTTGGTGCATACTGGGGAAAAGCCACATTCTTGTTCGGTTTGTGGTAAAAAATATAGCCAAAGGAGCACGTTGGTCATTCATATGAGAATTCACTCTGGTGAAAAACCTTACAACTGTGAGTTCTGCGATAAAGCGTTTATTAGTCGAAATTTACTAAATTGTCACAAGAAGAATCACGGATATTAG
- Protein Sequence
- MAMSSNCLLRVKIQPENDDNSLGFAFQNSNTTIIKSELVSIDLEEWVRNLEQVREPNFIVTCIVCNRLFMVKELNRHVKLHAEVPQEFKCDVCGKIYSAMKNLRRHRKGHDAQRTHACEICFKKFTYAHLLRDHMNTTHSAEKSWICEFCQRSFKIKKALITHIRGRHSKGGQYGCDLCGKTFAIPSILKQHYQGSHYVRSKCPICNEVFSSYYYLQKHKKIHKEPVHIVCSICNKVFDHTTLFKRHFRVHGEKPKYMCELCGKHFTSGSSLRDHKLIHSGTRPLLVNIQPENDDNSLGLVIQNSNTTLIKSELVLIDLEEWVRNLEQVREPNFIVTCIVCNRLFMVKELNRHVKLHAEVPLDFKCDVCGKVFVTKRNLTRHRKGHYAERPHACEICYKTFTYAQLLTDHMNTVHSVDKSWFCEFCQLSFKIKKGLTAHIRRRHSKAQHGCDLCSKTFTIPSYLKQHYQVSHHMESKCSVCNEVFSNYYYLQKHKKIHKEPVRIECSICNKVFDDKTLLKWHFRVHGEKPKYMCELCGKHFTSGSSLRDHQFLHSGTRPFECHDCGKKFHNKNTLRTHVLVHTGEKPHSCSVCGKKYSQRSTLVIHMRIHSGEKPYNCEFCDKAFISRNLLNCHKKNHGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -