Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:65615695-65630209[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.00014 0.0091 17.4 0.9 1 23 56 78 56 78 0.99

2 25 0.00015 0.0097 17.3 1.1 1 23 84 106 84 106 0.98

3 25 0.0024 0.16 13.4 3.1 1 23 112 134 112 134 0.99

4 25 0.0084 0.56 11.7 3.5 1 23 140 162 140 162 0.98

5 25 2e-05 0.0014 20.0 1.1 1 23 168 190 168 190 0.99

6 25 0.00072 0.048 15.1 1.4 1 23 196 219 196 219 0.95

7 25 5.2e-05 0.0035 18.7 1.8 1 23 225 247 225 247 0.99

8 25 0.047 3.1 9.4 3.8 1 23 253 275 253 275 0.98

9 25 0.00014 0.0096 17.3 0.9 1 23 281 303 281 303 0.97

10 25 0.0028 0.19 13.2 2.4 1 23 337 359 337 359 0.98

11 25 0.0037 0.24 12.9 3.3 1 23 365 387 365 387 0.97

12 25 4e-05 0.0027 19.0 1.1 1 23 393 415 393 415 0.98

13 25 3.4e-05 0.0023 19.3 0.9 1 23 421 443 421 443 0.98

14 25 0.003 0.2 13.2 0.4 1 23 449 471 449 471 0.98

15 25 0.069 4.6 8.9 4.6 1 23 531 553 531 553 0.96

16 25 0.00083 0.055 14.9 2.1 1 23 559 581 559 581 0.98

17 25 0.003 0.2 13.2 0.1 1 23 602 624 602 624 0.99

18 25 0.00025 0.017 16.5 3.3 2 23 631 652 630 652 0.97

19 25 0.0012 0.078 14.4 0.8 1 23 658 680 658 680 0.97

20 25 0.0053 0.35 12.4 0.9 1 23 686 708 686 708 0.96

21 25 0.0045 0.3 12.6 2.3 2 23 715 736 714 736 0.97

22 25 9.7e-06 0.00064 21.0 1.8 1 23 742 764 742 764 0.98

23 25 0.033 2.2 9.9 1.0 1 23 770 792 770 792 0.96

24 25 0.00017 0.011 17.1 0.3 1 23 798 820 798 820 0.98

25 25 1.9 1.3e+02 4.3 0.2 1 11 826 836 826 842 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.00014	0.0091	17.4	0.9	1	23	56	78	56	78	0.99
2	25	0.00015	0.0097	17.3	1.1	1	23	84	106	84	106	0.98
3	25	0.0024	0.16	13.4	3.1	1	23	112	134	112	134	0.99
4	25	0.0084	0.56	11.7	3.5	1	23	140	162	140	162	0.98
5	25	2e-05	0.0014	20.0	1.1	1	23	168	190	168	190	0.99
6	25	0.00072	0.048	15.1	1.4	1	23	196	219	196	219	0.95
7	25	5.2e-05	0.0035	18.7	1.8	1	23	225	247	225	247	0.99
8	25	0.047	3.1	9.4	3.8	1	23	253	275	253	275	0.98
9	25	0.00014	0.0096	17.3	0.9	1	23	281	303	281	303	0.97
10	25	0.0028	0.19	13.2	2.4	1	23	337	359	337	359	0.98
11	25	0.0037	0.24	12.9	3.3	1	23	365	387	365	387	0.97
12	25	4e-05	0.0027	19.0	1.1	1	23	393	415	393	415	0.98
13	25	3.4e-05	0.0023	19.3	0.9	1	23	421	443	421	443	0.98
14	25	0.003	0.2	13.2	0.4	1	23	449	471	449	471	0.98
15	25	0.069	4.6	8.9	4.6	1	23	531	553	531	553	0.96
16	25	0.00083	0.055	14.9	2.1	1	23	559	581	559	581	0.98
17	25	0.003	0.2	13.2	0.1	1	23	602	624	602	624	0.99
18	25	0.00025	0.017	16.5	3.3	2	23	631	652	630	652	0.97
19	25	0.0012	0.078	14.4	0.8	1	23	658	680	658	680	0.97
20	25	0.0053	0.35	12.4	0.9	1	23	686	708	686	708	0.96
21	25	0.0045	0.3	12.6	2.3	2	23	715	736	714	736	0.97
22	25	9.7e-06	0.00064	21.0	1.8	1	23	742	764	742	764	0.98
23	25	0.033	2.2	9.9	1.0	1	23	770	792	770	792	0.96
24	25	0.00017	0.011	17.1	0.3	1	23	798	820	798	820	0.98
25	25	1.9	1.3e+02	4.3	0.2	1	11	826	836	826	842	0.86

Sequence Information

Coding Sequence: ATGGAAACTCAAAGCCACTCAAGTGACTACCCCCAAATTAAGAAGGAAGAAGAGGTGGAATTGAAGTTGGAAGAGTTACATCATTCCATAGATATTAAGGACGAACCAGTTATTCTAGAATTTGAACCGATTACAGCATGCAAACCACAAACTATCGAAAACCTATTTACGTGTGCAATTTGTGAGTATAAATCTGCGTATAAGGGCAGCTTGAAAAGGCACTTAagaactcatactggcgaaaagCCGTTTACGTGTGAAGTTTGTCGAGCTAAATTTGCACATAAGGAAAGTTTACAAAATCATATTTCAATTCATACTGGCAACAAACCTTTTAAATGTGGATTTTGTGACTGTCAGTATGTCCGAAAGGAAAGGTTAGAagaacatttaagaactcactcCGGGGATTTTCCTTTTACATGTGatatttgtgattttaaatCCAAATATAGGAGATGTTTGATAGTTCATCTAAGAAGtcacactggcgagaaaccatttacCTGTGAAATTTGCGATTATAAATTTGGATATAAAAGGAGTTTAATCCTTCACTTAAGAACTCATACGGGTGACAAACCCTTCGTATGCGAAAtttgtgaatttaaatttgggaACGAAGAACATTTAAAGCGGCACTATTCAAATATTCATATGGGCGAGAAGCCGTAcgtttgtaaaatttgtgattataaatgtgcaggTAGCGATCGTTTGAAAAGACACATGAGGATTCATTCAGGAGAGAAACCGTTTTCGTGTGCgctttgtgactataaatgtgcacataagcaaAGTTTACTTTTACATGAACGAAGTCatacaggcgataaaccgtttgcATGTCCAACTTGTGGTTTTAAGTATTCAGATAAAAAGAGTCTCAAGTATCATTTGGGAACTCACACAGGAGTGAAGCCTTTCTTGTGTGAATTTTGCGACTATAAATCATTGTGTAAGGAAAGATTGAGGGTTCACGTAAGAACTCACACTGGCGAAAAACCGTTCAAATGTGAAagttgtgactataaatgcacagaaaaaggttatttaaaaattcatgcaAGAattcatactggtgagaaaccgtttgcgtgtgaattttgtgattataaatgtagTAACAAGAAGTATTTAAGACCTCACATGAGAGTTCATACAGGCGAGAAGCCGTTTGTTTGTGAAATATGTAACCATAGATTTGCATATAAGGACGGTTTAGTTAAGCATACGAGAGTTCATACAGGAGAGAAACCGTATGCCTGCAATGTCTGTGATTACAAATGTTCAGAAAAAGGAAGTTTAAATGTTCATATGAGAATTCATACAGGGGAGAAACCGTACGCCTGTACTGTTTGTGCCTATAAAAGTGGACGTAAAGGAGATTTAAGAAAtcatttgaaaactcacaccAACGAAAAGCCGTTTAAGTGTAAcGAAAATCAATGCGCCATTAGCTACTACGAAGTTAAGACGGAAGAAATTGAAGTAAAGCTggaagatttgcatcattccATTGACCTCAAAGAAGATCCTTCAATTTTAGAGTGTCCGTTGGGTATAGGAACTCCTACTGATAATAAACCATTTTTGTGCACATTTTGTAGCTACAAATGTAAACAGAAAAGAGTTTTAGAagaacatttaagaactcacacaggtgagaagCCATTTAAGTGCGCAATTTGTGAATATAAAAGTGCACATAAAGGGAgcttaaaaaatcatttacgaAATCATGGCGCATCATCCATACGAGATTTAAAATTACGTCGAAAGTATCATACTGACGAGAAACTGtataaatgtgaaatttgcgacATAAAAATTGCAACTGAGGAAAGGTTAAATCTTCACGTTAGAACTCATATAGGCGAAAAACTCTTGGAGTGCAGTATATGCGATTATAAATGTACTCGAAAGGCCACGTTAAAACTTCACTACAAGACCCATAATGGCGAGAAACCATTTAAGTGTAAAGTTTGTGAATCTACATTTGACCGACGAGTTGATTTGCAAGTTCATTTTATAAGTCATACAGGTGCCAAACCGTTCGCATGTGATTTATGTGAATTTAGAAGTACCCGAAAAGATTATTTAGTAAGGCACTTGACCAgtcatactggcgaaaaaccgTTAACGTGTTATGATTGTGGTTATAAATGTCGACTTAAAAAAGGATTAGTTACACATTTAAGAATgcataccggcgagaaaccgtatAATTGCGAAATTTGTGGTTACAAATGTGCGCGTAAACCAGATTTAAAACagcatttaagaacgcattcgggcgagaaaccgttcaagtgtgacATTTGTGAATATGAAAGCTCCCAAAGcggacatttaaaatttcacttaGCAATTCATACAGGTGACAAACCATTTAGTTGTAATGTATGTGATTATAAAACTGCACGTAAAGGAGATTTAGCGATTCATTTAAAATCGCATACAGAATACAAACCATTTAAATGCCAAATTTGCGACCATAAATATAGAATTACAAATTCTCTTTTGTTTGCATGGTACAGAAAAATGAATCGTATTTTGCCCAAGCATTATGGGTTGTACTTTGGTGACTTAGAAGATCTAAAATTTTGTTACGAAGCAGGAAGACTTTGTGTTGGTTGTATAGTTAACAGAGATGGAGCAAGACACGAAGAGGCATCGCGCAAAAGGACATCAGCGTTCAAGGTATAA
Protein Sequence: METQSHSSDYPQIKKEEEVELKLEELHHSIDIKDEPVILEFEPITACKPQTIENLFTCAICEYKSAYKGSLKRHLRTHTGEKPFTCEVCRAKFAHKESLQNHISIHTGNKPFKCGFCDCQYVRKERLEEHLRTHSGDFPFTCDICDFKSKYRRCLIVHLRSHTGEKPFTCEICDYKFGYKRSLILHLRTHTGDKPFVCEICEFKFGNEEHLKRHYSNIHMGEKPYVCKICDYKCAGSDRLKRHMRIHSGEKPFSCALCDYKCAHKQSLLLHERSHTGDKPFACPTCGFKYSDKKSLKYHLGTHTGVKPFLCEFCDYKSLCKERLRVHVRTHTGEKPFKCESCDYKCTEKGYLKIHARIHTGEKPFACEFCDYKCSNKKYLRPHMRVHTGEKPFVCEICNHRFAYKDGLVKHTRVHTGEKPYACNVCDYKCSEKGSLNVHMRIHTGEKPYACTVCAYKSGRKGDLRNHLKTHTNEKPFKCNENQCAISYYEVKTEEIEVKLEDLHHSIDLKEDPSILECPLGIGTPTDNKPFLCTFCSYKCKQKRVLEEHLRTHTGEKPFKCAICEYKSAHKGSLKNHLRNHGASSIRDLKLRRKYHTDEKLYKCEICDIKIATEERLNLHVRTHIGEKLLECSICDYKCTRKATLKLHYKTHNGEKPFKCKVCESTFDRRVDLQVHFISHTGAKPFACDLCEFRSTRKDYLVRHLTSHTGEKPLTCYDCGYKCRLKKGLVTHLRMHTGEKPYNCEICGYKCARKPDLKQHLRTHSGEKPFKCDICEYESSQSGHLKFHLAIHTGDKPFSCNVCDYKTARKGDLAIHLKSHTEYKPFKCQICDHKYRITNSLLFAWYRKMNRILPKHYGLYFGDLEDLKFCYEAGRLCVGCIVNRDGARHEEASRKRTSAFKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -