Rlut019735.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha lutea
Gene Symbol
-
Assembly
GCA_958510855.1
Location
OY294039.1:10548062-10550450[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.26 17 7.1 0.5 1 23 221 243 221 243 0.95
2 18 0.00015 0.01 17.2 2.2 2 23 250 271 249 271 0.97
3 18 0.00014 0.0091 17.4 0.2 1 23 277 299 277 299 0.98
4 18 0.00041 0.027 15.9 2.4 1 23 305 327 305 327 0.98
5 18 5.4e-06 0.00036 21.8 1.4 1 23 333 355 333 355 0.99
6 18 9.4e-05 0.0062 17.9 0.4 1 23 361 383 361 383 0.99
7 18 3e-06 0.0002 22.6 2.8 1 23 389 411 389 411 0.99
8 18 0.00021 0.014 16.8 1.3 1 23 417 439 417 439 0.98
9 18 0.0033 0.22 13.0 0.7 1 23 445 467 445 467 0.98
10 18 2.1e-06 0.00014 23.1 1.5 1 23 473 495 473 495 0.99
11 18 0.00029 0.019 16.3 3.9 1 23 501 523 501 523 0.98
12 18 3.5e-06 0.00023 22.4 0.1 1 23 529 551 529 551 0.99
13 18 3.8e-05 0.0025 19.1 3.9 1 23 557 579 557 579 0.99
14 18 2.3e-05 0.0015 19.8 0.3 1 23 585 607 585 607 0.99
15 18 2.9e-05 0.0019 19.5 4.7 1 23 613 635 613 635 0.99
16 18 0.00023 0.015 16.7 0.2 1 23 641 663 641 663 0.99
17 18 4.5e-05 0.003 18.9 2.5 1 23 669 691 669 691 0.99
18 18 0.0055 0.37 12.3 5.9 1 23 697 719 697 719 0.99

Sequence Information

Coding Sequence
ATGCAGGCCAACATATGCCGGGCCTGCTTGCAACAAATTGGAGATTCATTACGTATTTATCATTTGGATAGCGTGGAATCCTGCGATTCCGCCAGTGTCCGGCAAAAGTTGGACGATTTAGCGTTAGATATTAACTTGAATATTACTCCGAATGCTGTTATTTGTATCGAATGCAGGATTTCGATCGATTCGGCTTACAACTTCAAGAGGCGGTGTTTGGAAACcgaacaaaaaatacaaaattatgtaaataagaTGGGGTATAATTTTGCGTATGTCGATTTGGGGCAAGTGGTGAAACAGGATCAGGAGTCGaacaattttgaggttaagatAAAGCAAGAGAAAGAGGACGAAGATTCATACCCGTCTGATGATAATGGTTTACGTAACATCAAGCAGGAACCTCTTGACAATGATTACGAGGCGGAGGTGAATAATTACCCCCCACAAGCGGTAGAGGAGGAGGAACAAGAGAATCTtaccaatttcaaaattattgatgtGAAAACTGACGATGACAAAGTTGACGATGTTGAGGAACCTGAAAGTCTGCTGGTGGCTTCCAAGAAGGAAGTTGAAGAACCGAAGGTAGTGGTAGGGGGTGAATCGGTGCTTCCTAACCGAAAGTATATGAAGACGATAATAGGGAAGCAGTCGTATTTGTGTAATGTTTGTGGTTACCGGACGGCCTTGAAAAGGCGGTTAGCTCTTCATACCAAGCTCCACGAAGAAGATAGATTGTTGAAATGTACTCAATGCAGTTATGTTTGTGCACAGAggagtaatttaaatattcatacaCGGATTCACACCGGATACAAACCCTACAAGTGTCAGGAGTGTGATTACAGTACAGTTTCGAATTCTGCTCTCGTCGTGCATAATAGGATCCATACGGGAGAAAAACCGTACTGTTGTAACGTCTGTGGTCATAGTACCATATCAAAATCGGCTCTAACCGTTCATTCCCGTATCCATACCGGAAGTAAACCGTACAAGTGCACTGTCTGTACGTACCGCACGATAACCAAGTCCTCTTTGATTGTTCATATGCGTACGCACACGGGAGACCGACCCTACAAGTGTACTCTGTGTTCTTACAGCACAACTGCTAAATCGGCCCTGAACGTTCACATCAGAATACACGAAGGCAATAAACCATTCCAATGCCCCCATTGCGACTACAAGTGCGCCCAACGAAGCGGCTTGAACGTCCACATGCGTGTACATTCGGGTGAGAAGCCGTATCAGTGTATAGAGTGCAAGTACAAAACCAGCAGCAAGAGCAGTTTGGTAGTTCACATGCGAACACACACCGGAGAGACACCGTATCACTGCACCGTCTGCAATTACAGCACAGCAGCCAAGTCGGCCTTAAACGTTCACAGTAGAATCCATGGTGAaaataaaccgtttaagtgttcCGAGTGCGGTTACAGATGCGCCCAAAGGAGCGGCCTAACCGTCCACATGCGAATCCACACCGGGGATAAACCGTACAAGTGTTCACAGTGCGACTACAGATGCAGTTACCGAGGAAATTTAAAGGTTCACAATCGTGTTCATACAGGCGAAACGCCGTACAAGTGTAACGTATGCGGGTACAGCACCACCGCGAAGTCGGCCCTGATAGTTCACATGAGGATTCACACTGGGGAAAAACCGTATAAGTGTGGTGATTGTTCGTACAAGTGTAGTACCAAAAGTAGCCTGAAAGTGCACACACGCGTCCACACAGGAGAAACTCCTTACAAATGTAGCGTTTGTGATTACAGAACGACTGCGAATTCTGCGCTGGTTGTACATATGCGCACCCATACTGGTGAAAAGCCCTACAAGTGCACCGACTGTTCCTACAGGTGCAGCAATAAGAGCAGTCTAAAAGTTCACACTAGAATACATACGGGAGAAACTCCGTTCAAGTGCACAGTGTGTGAGTACCGAACTACTGCAAATTCCGCGTTGGTTGTTCACATGAGGATTCACACCGGGGACAAACCATATAAGTGCGGTGATTGTGCGTATAGGTGTAACAATAAAAGTAGTTTGCGTGTCCACATGAAGGTGCACATGGGAAGAACGCCCTATAGGTGTAAGATTTGTTCTTATAGTTGTAAGAAACGTTTCATTCTAAAGAGGCACATGCGAATTCATGCGCAAGAAATTGCAAGTCAAAGTGAAGCTGCAGCCGTTGTGACCGTTGAGGATAATGGAACTAATGCAGATGACGACTGTGTGGTGACCGTTGAAGATAACGCGGCTAAGGAGGATGAAATTGTGACCATCGAAGACGATGAAGTTGAAACGGGAGATGAAAATATAGTAGGCCAGTag
Protein Sequence
MQANICRACLQQIGDSLRIYHLDSVESCDSASVRQKLDDLALDINLNITPNAVICIECRISIDSAYNFKRRCLETEQKIQNYVNKMGYNFAYVDLGQVVKQDQESNNFEVKIKQEKEDEDSYPSDDNGLRNIKQEPLDNDYEAEVNNYPPQAVEEEEQENLTNFKIIDVKTDDDKVDDVEEPESLLVASKKEVEEPKVVVGGESVLPNRKYMKTIIGKQSYLCNVCGYRTALKRRLALHTKLHEEDRLLKCTQCSYVCAQRSNLNIHTRIHTGYKPYKCQECDYSTVSNSALVVHNRIHTGEKPYCCNVCGHSTISKSALTVHSRIHTGSKPYKCTVCTYRTITKSSLIVHMRTHTGDRPYKCTLCSYSTTAKSALNVHIRIHEGNKPFQCPHCDYKCAQRSGLNVHMRVHSGEKPYQCIECKYKTSSKSSLVVHMRTHTGETPYHCTVCNYSTAAKSALNVHSRIHGENKPFKCSECGYRCAQRSGLTVHMRIHTGDKPYKCSQCDYRCSYRGNLKVHNRVHTGETPYKCNVCGYSTTAKSALIVHMRIHTGEKPYKCGDCSYKCSTKSSLKVHTRVHTGETPYKCSVCDYRTTANSALVVHMRTHTGEKPYKCTDCSYRCSNKSSLKVHTRIHTGETPFKCTVCEYRTTANSALVVHMRIHTGDKPYKCGDCAYRCNNKSSLRVHMKVHMGRTPYRCKICSYSCKKRFILKRHMRIHAQEIASQSEAAAVVTVEDNGTNADDDCVVTVEDNAAKEDEIVTIEDDEVETGDENIVGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01292028;
90% Identity
iTF_00272977;
80% Identity
-