Rlut029706.2
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- gl_1
- Assembly
- GCA_958510855.1
- Location
- OY294041.1:31269227-31279705[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2e-06 0.009 17.0 0.5 14 41 254 278 245 280 0.87 2 5 0.021 95 4.1 0.3 18 41 286 306 281 308 0.83 3 5 0.0071 32 5.6 0.6 6 38 303 335 298 335 0.80 4 5 5.3e-05 0.24 12.4 0.7 18 40 342 361 338 364 0.89 5 5 0.17 7.7e+02 1.2 2.9 6 40 359 389 358 391 0.78
Sequence Information
- Coding Sequence
- ATGGATGCGAGTTATGTCCCTAATAATCCGCAGTTTGGCTTGCAACTCGAATGCAATTGGACTGCAGGAGTGCAGTCTTGTCAGAACTCATGTCAAAGTTCTTGTCCGGACGAACTTTCCTCCTGCTGGCCCGAAGACATGGCATCTTTCACTTTACCTTTAGATTTAGAACCACTACCCACGCTCTTTCCATTTTCTCCATGTTCCAGtgcaaacaataattttaaAACAGAAGATTTGCAACACAACCCCTATGGATTTACTAAAGAAGGTAAACCTACTGCAGATATGGCCGACGTTTTGTTATCACTCAAACATGCCGTCGTACATCCGGAACAAAATGAACGATACAACCAGCAACAGTTTTATCATCCTCAAGTTTTGTTATCACCTGGAGGTTATACCGGATCGCTGTGCGATCAAAATTTTTCCCAACAGCCAACCATGTTTCCCAGTATGTCGGTTAATGTTTCCATGAATATGACCATGCATGGGTATCATCCAAATTCGACCTATCCGACAACCGAAATTTCGTGCCCACAGGTGCAATGGAATTCAAATCCTCAAGGATCTATGCCTGGAAATTATTCCACTCAAGGGCTGCTCAGTCCAACCTACGCCGGAGCAACTTACTCCTTTACGGCTGATTTCAGACCCCCACAGGAAGTTCCCATGATTTCGGCTTCGTACAAACCAGTTTCAGTATCTGTTGCCTCACCAAGACGGAAAGCCTTTTGCAGTCCACTGGACGATGACTGTCAAAAACCAAACGTTTGTAGGATATGTGgaaaaAGTTACGCTCGACCAAGTACCTTAAAAACGCATCTGAGGACACATTCCGGGGAAAAACCCTACAGATGTATCGATTGCAACAAATCCTTTTCACAAGCAGCAAATTTAACAGCACATGTAAGGACGCATAGTGGTGAAAAGCCATTTCGCTGTCCGGTATGTGATCGACGCTTTTCGCAATCGTCCTCAGTTACCACGCACATGCGAACACACTCAGGTGAACGCCCGTATAGATGTAGGTTATGTAAAAAAGCATTTTCAGACAGTAGCACTTTAACTAAACACTTAAGGATACACAGCGGAGAAAAACCGTACGAATGCAAATTATGTTTACTTAGATTTTCTCAAAGTGGAAACTTAAACCGACACATGAGGGTTCACGGTAACGGTGGAATCATGTCCACGTGA
- Protein Sequence
- MDASYVPNNPQFGLQLECNWTAGVQSCQNSCQSSCPDELSSCWPEDMASFTLPLDLEPLPTLFPFSPCSSANNNFKTEDLQHNPYGFTKEGKPTADMADVLLSLKHAVVHPEQNERYNQQQFYHPQVLLSPGGYTGSLCDQNFSQQPTMFPSMSVNVSMNMTMHGYHPNSTYPTTEISCPQVQWNSNPQGSMPGNYSTQGLLSPTYAGATYSFTADFRPPQEVPMISASYKPVSVSVASPRRKAFCSPLDDDCQKPNVCRICGKSYARPSTLKTHLRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYECKLCLLRFSQSGNLNRHMRVHGNGGIMST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00422836;
- 90% Identity
- iTF_00951230;
- 80% Identity
- iTF_01294241;