Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:54208612-54209745[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0015 6.8 7.8 0.7 19 38 75 91 69 96 0.82

2 11 0.093 4.2e+02 2.0 2.9 15 40 99 121 91 124 0.76

3 11 1.4 6.2e+03 -1.7 0.2 19 40 131 149 129 153 0.56

4 11 0.63 2.9e+03 -0.6 1.2 14 29 154 169 146 184 0.65

5 11 0.0013 5.8 8.0 1.9 14 30 182 200 175 208 0.78

6 11 0.0038 17 6.5 2.7 18 41 214 234 210 236 0.89

7 11 0.015 68 4.6 2.3 18 40 242 261 235 264 0.85

8 11 0.0046 21 6.2 2.1 10 29 264 281 257 286 0.78

9 11 5.2e-06 0.023 15.7 0.3 5 31 286 311 283 314 0.91

10 11 2.5e-05 0.11 13.5 0.4 5 32 314 339 312 341 0.91

11 11 5.8e-05 0.26 12.3 0.5 6 39 342 372 339 375 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0015	6.8	7.8	0.7	19	38	75	91	69	96	0.82
2	11	0.093	4.2e+02	2.0	2.9	15	40	99	121	91	124	0.76
3	11	1.4	6.2e+03	-1.7	0.2	19	40	131	149	129	153	0.56
4	11	0.63	2.9e+03	-0.6	1.2	14	29	154	169	146	184	0.65
5	11	0.0013	5.8	8.0	1.9	14	30	182	200	175	208	0.78
6	11	0.0038	17	6.5	2.7	18	41	214	234	210	236	0.89
7	11	0.015	68	4.6	2.3	18	40	242	261	235	264	0.85
8	11	0.0046	21	6.2	2.1	10	29	264	281	257	286	0.78
9	11	5.2e-06	0.023	15.7	0.3	5	31	286	311	283	314	0.91
10	11	2.5e-05	0.11	13.5	0.4	5	32	314	339	312	341	0.91
11	11	5.8e-05	0.26	12.3	0.5	6	39	342	372	339	375	0.78

Sequence Information

Coding Sequence: ATGGATCACAGTAAAAACTTAGTTGATACACAAAGTTTGTCCACCTCCAACAATGATTTGGAAACGTCAATTAAAACAGAACAAGTAGATTACACTGACCTGGAATTGGAAGAGTTGCATCATTCCATCGACATTAAACATGAAGATACTTCTATTTTCAAATCTGATGTGGATAAAGAACCGCTTCCATGTGAAGAATTCGAcggtaaaaaattatttgggtGTCAAATCTGTCAAAAAAAGTTTACTCGAAAATCAAATTTGACAGTTCATCAGAGGCTCCATTCGGGTGAAAATCCATATGTATGTGTATTTTGTGAACGTAAATTATGCAGTAAATCAAGTTTAAACGACcacttaaaaactcatactggtgaaaaACCCTTTGGATGTGAATTATGTGACCGCAAATTTATACTAAAAAGAAGTTTGGAATCTCATTTACGCACTCACACGGGCGAGAAACCGTTCAAATGTCAAATTTGTCCTCGCGCATTTCCATTTCGAAATTCTTTAAGAACGCATTTAATAGTTCATATGGGACAAAAACGGGTTACATGTGAAATTTGCAAACGAACATTTTCAAGTAAAAGAATGTTGGGGATCCATTTACGCACTCATTCCGGCGTAAAACCAtttacatgtgaaatttgtcatcatcaattttcacaaaaaacGACGTTAAAGATTCATATACGCACTCATACGGGTGAAAAACCTTACAGCTGTAAAATATGTGCTCACAAATTTTCGAATAAAACTACGTTAAAGTGGCATTTAATaactcatactggtgaaaaAATGTTcacatgtgaaatttgcgacCACAAATTTTCTAGGAAATGTACTTTAGATAACCATTTTCGCATTCATACGGATGAAAGACCTTTTACATGTCAGATTTGTGGACGCAAATTTTCTCGGAAAGGAACTTTAGATAATCATTTTCGCATTCATACGAATGAAAAACCTTTTGCATGTCAAATTTGTGGACGCAAATTTTCTCGGAAAGGAACTTTAGATTATCATTATCGCATTCATACGGATGAAAAACCGttcacatgtgaaatttgtgggcGAGAATTTAGACGTAGCGGAAATTTCAAGGTTCATTTAATGAATCATAGTGGTTAA
Protein Sequence: MDHSKNLVDTQSLSTSNNDLETSIKTEQVDYTDLELEELHHSIDIKHEDTSIFKSDVDKEPLPCEEFDGKKLFGCQICQKKFTRKSNLTVHQRLHSGENPYVCVFCERKLCSKSSLNDHLKTHTGEKPFGCELCDRKFILKRSLESHLRTHTGEKPFKCQICPRAFPFRNSLRTHLIVHMGQKRVTCEICKRTFSSKRMLGIHLRTHSGVKPFTCEICHHQFSQKTTLKIHIRTHTGEKPYSCKICAHKFSNKTTLKWHLITHTGEKMFTCEICDHKFSRKCTLDNHFRIHTDERPFTCQICGRKFSRKGTLDNHFRIHTNEKPFACQICGRKFSRKGTLDYHYRIHTDEKPFTCEICGREFRRSGNFKVHLMNHSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294106;
90% Identity: iTF_01294106;
80% Identity: iTF_01294106;