Rlut001180.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294036.1:14700064-14701636[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-08 4.5e-05 24.1 0.0 1 34 18 51 18 56 0.85
Sequence Information
- Coding Sequence
- ATGCCGAGAGTATATAAACGTAAAGAAAACGCTAGACCTATTAAGCAATATACTGATGAAGCACTTCAAAAATGTTTAACTGAAGTATTGGATAACAAAATAAGTGTGGGTAAGGCTTCTGTAAAATATGGAATACCTAAAGGTACCCTGATTAATAAAATTCATGGACAATGTATTAAAAAACATGGAGGTCAAACTGCGTTTACAGAACTAGAGGAAAATGATCTCGTAGAAGGATTACTTGCCCGTACAAAATGGGGTTGTCCATTCAATGATTTGGATTTGCGTTTAACCGCCAAAGCATACCTTGATCGCTTGGGAAATGACtctcgatttaaaaataatttaccagGACCAGATTGGGCTAAGGGATTTTTGGCGCGACACAAACGACAATTAAGTGAGCGGATGGATAACAACATAAAACGAGCGAGTGCAGCAGTGAATTCTGAAATGTTCACAGATTTCATAAACGAATTAACAAAAACCTTGGAAGGAAGTACGTGTAAATCTAATTCCATTGGTTTTCGCGGATACCACACAAAGGGAAGTTCCAGTAAACAGAGAAGTGATGAGGAAGGAAGTTCAAGTCAATCCAATTTAGTGCCATCGACTTTATTCGAATCCAAAAGTCGGAATGATGAACGAGATAGCTTTTTACCTGAAGATATGTCTGAAAATAGTATGGAAGTTTCGTCTCCAAGACCTGATCCGCTTGAGCTTAAATTTGATCAATCTTCAACAACTGACTATTTTTTACCTTCGAATTCGGCTGATACTGAAGAGGAagcatattttgtaaataatccaTCGCAACCGCTTGGTGTAGTAAATGACGCATatacgaaattttttttaagtatggCAGACACAGTTCGAGGTTTGCCTCCTGATTTGCAAATTATAGCAAGAAGGAATGTTCTGCACGAAGTTACTGAATGCGAATTAACTGCACTTAGTCGTTGTAATGGTTCAAAGAATTGA
- Protein Sequence
- MPRVYKRKENARPIKQYTDEALQKCLTEVLDNKISVGKASVKYGIPKGTLINKIHGQCIKKHGGQTAFTELEENDLVEGLLARTKWGCPFNDLDLRLTAKAYLDRLGNDSRFKNNLPGPDWAKGFLARHKRQLSERMDNNIKRASAAVNSEMFTDFINELTKTLEGSTCKSNSIGFRGYHTKGSSSKQRSDEEGSSSQSNLVPSTLFESKSRNDERDSFLPEDMSENSMEVSSPRPDPLELKFDQSSTTDYFLPSNSADTEEEAYFVNNPSQPLGVVNDAYTKFFLSMADTVRGLPPDLQIIARRNVLHEVTECELTALSRCNGSKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01291470;
- 90% Identity
- -
- 80% Identity
- -