Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294037.1:5487093-5489129[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.6e-10 9.6e-08 32.6 0.0 3 38 17 52 15 55 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.6e-10	9.6e-08	32.6	0.0	3	38	17	52	15	55	0.93

Sequence Information

Coding Sequence: ATGCCACGACCGCAACCTAAAAAAACAGGTATTGGGAAAACAACTGCTGAAGTAATGAAAAAAGCCATTCATGATATTATCGAGGGTCGGCTATCAACTAAAGCCGCTGCCATGCAATATAACGTTCCACGTACCACTCTCAGGAGATATTTGAAGAAATGTCGGGATTGTCAACAGGAAATAGATTGGGATTCCGGATTAGAAGGAGCACCTCGGATGACTCCTAATTATAaagttaatcaaatttttaacatttatgaAGAAAAGCAGTTCAGTAATTATCTAATAACTATGACAAAACTACATCATGGGCTCAATCCGTCAAGCGCAAGAAAGCTTGCATTCGATTTGGCAGTCgccaataataaaaaaatgccAATATCATGGCAAGAAAAACAGACAGCGggaaaattttggtttacaAGTTTCATGAAACGTAACAAAGATTTATCACTAAGATCTGCTGAGGCGACGTCACTTGGAAGAGCTATGGGTTTTAACAAGCCAGTTGTTGAGAAATTTTTCATAAACTTACGAGGaacttatgaaaaattaaatctgGAACCAAGTCGTATCTATAATGTTGATGAGACAGCATTAACGACAGTTCAAGAAACAGGAAAAGTATTGGCACAAAGAGGTCAAAAACAAGTAGGTCACATTGTTTCTAATGAAAGAGGAGTTCTAGTAACCATGTGTGGTGCGATAAATGCCATAGGAAACTCCATTCCACCTTTCCTAGTTTTTCCACGGAAAAACTTTAAAGACCACATGCTAAAAAATGCACCTCCAGGAACAGTAGGAGTTGCTTCACCGTCAGGATGGATGACCACGGAACTGTTTATCCAGTGGATGAAACATTTCATTCGACATGCAAACCCATCAGAAACCTCTCCCGTCCTACTCATCATGGACAATCATGAAAGCCATGTGTCTTACGCGACTATCACTTTAGCTAAAAAGAATAACATAATTTTGCTAACTCTACCGCCTCATACAAGTCATCGGCTTCAACCACTAGACAGAGGTGTTTACGGGCCtctaaaaaagttttatagCAACGAATGCCAAAAATGGTTGCTAAACAACCCCGGTAAAAGGATAACTATCTATGACATCGCAGATATCTTACACGAAGCCTACCCACTTGCTTTCAGTCCCAAGAACTGTATTTCATCATTCAAAGCGACTGGTATTTACCCATACAATGACCAAGTTTTCAGCGATGATGACTTCATGGCTGCCACTGTAACTGATGTGCCTCTAACACACGGAAATGATGCAAGACAAGATGAAAACAAAGACATTAATAATGTCCCATCAACATCATCGTATCGTGAGAAAACACCCGAACCTGATCACGTAGACCCCGGCACATCTATTGAACTTATCCATTCGACTCCTGAGAAACAATTCGTTTCTCCAGATATAATCAAACCATTTCCAAAGGCGACGTTAGTTTCTACAAATAGGAAGCAgcgaaataaaaaaacaacagaaATTTTGACCAGCACACCAGTTttgaaaaggatagaagaagaatataaaataaaaaaacaaagaCAAGCTGTAGTACAAAAACAGAAAACCGTTAAGAGAAAAATTTATGGAAATGATAAGATATGTGAAGCAATAGAGAAGAAGAGAAAATCTGCCTCCAGCAGTAGCAGCAATAGTGAAGAGGAAATGAGTGACCTCACAGATTCTGACAACGTCAGCATTTTTTCAGAGCCTGAAGAAGAAATGGTTATAgacaatataaatataaattcctttattttggtcaaattttctGCAAAGAAATTAACCAAGTTTtatattggaaaaattacagAAGTTCTTACCGACGAATATATGGTAAGTTTTTTACGCAGACATGGTAGCAAATTTTCCTATCCACATGTCCCAGATTGTGCTGCTGTATCTAAAGAAGATGTAGTTCTACATTTGCCTCAGCCGAAGAAAGCTGGTGGAACCAACAGAACTGCAAGTGTTTTCACTTTTTCGCTTGATTTGTCTGTTTACAATGTATGTTAA
Protein Sequence: MPRPQPKKTGIGKTTAEVMKKAIHDIIEGRLSTKAAAMQYNVPRTTLRRYLKKCRDCQQEIDWDSGLEGAPRMTPNYKVNQIFNIYEEKQFSNYLITMTKLHHGLNPSSARKLAFDLAVANNKKMPISWQEKQTAGKFWFTSFMKRNKDLSLRSAEATSLGRAMGFNKPVVEKFFINLRGTYEKLNLEPSRIYNVDETALTTVQETGKVLAQRGQKQVGHIVSNERGVLVTMCGAINAIGNSIPPFLVFPRKNFKDHMLKNAPPGTVGVASPSGWMTTELFIQWMKHFIRHANPSETSPVLLIMDNHESHVSYATITLAKKNNIILLTLPPHTSHRLQPLDRGVYGPLKKFYSNECQKWLLNNPGKRITIYDIADILHEAYPLAFSPKNCISSFKATGIYPYNDQVFSDDDFMAATVTDVPLTHGNDARQDENKDINNVPSTSSYREKTPEPDHVDPGTSIELIHSTPEKQFVSPDIIKPFPKATLVSTNRKQRNKKTTEILTSTPVLKRIEEEYKIKKQRQAVVQKQKTVKRKIYGNDKICEAIEKKRKSASSSSSNSEEEMSDLTDSDNVSIFSEPEEEMVIDNININSFILVKFSAKKLTKFYIGKITEVLTDEYMVSFLRRHGSKFSYPHVPDCAAVSKEDVVLHLPQPKKAGGTNRTASVFTFSLDLSVYNVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -