Rlut013333.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:11262902-11270672[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-09 1.7e-06 28.6 0.0 1 40 396 434 396 438 0.92 2 2 0.00059 0.35 11.6 0.0 2 39 485 522 484 525 0.90
Sequence Information
- Coding Sequence
- ATGGCGTCATTTAATGACTTACCTTTAGATATATTGACcgaaatattttcatatttaccGCGAAGAGAACGCGTCGCCTGTATGATGGTATGTAGTTTTTGGAAAGCAGCAATGGATATTCCATCTATCTGGCGCAATGTGACCGTGTATTTAGATTCGGATTTAGTTGAATCCAGCACTGTTATGGCCACAAAGTGGTAccataaatattttcaatcgaTGGAATTTTGCTGGAGCAATCCTCGTTTGCCAACTCGTTGGATGCAATACGATTGTCAGGAGTTTGCAAAAAGGGCGTGccgttatttaattttactccAAAATTCTTCCATCCAATTGGAATCGGTGAAAATTGATGACTGGTACGAAGTTCCTAAGTTCAAAAAAGTTATTTACCACTTATGCAAGTTTTTAAAATCGCAAGAGTGCATGTCAAAGGTCTGCTTTATAAATGTAACATTTAACAAACCCGAATGCATAAAACTGTTAGCTTGTTGTCTTTCTTCGATCAAAACATTGAAGTATTTGGATATCAGTAACTGTTACCACGCGAATCCTTCCATGTACGAAGCTGTCACTTTTCTTAGTTGTTTGGAGCATTTATCCAATTTGAAGGTCCTAAAACTGGATTATACTACATTGTGTGGTGGAGTTATCGACTGCATCATCACCAGCAAAAATGAACAACTGGATTCCTTGGTAGTAAATCTAAGAGAGTACGATTACACTTTAAATTTGATAAGCGATGACGCTTGGATATGTCTGAAGCAACAATGCCCTCAGGTGAAAGTTTCATTCTGCATTCGAAATATTTGTCACTACGAAGTAATTGGAAGAATTTTGAATCCTGCAATACCCATGTATTCATTTTCACTTAATTGCGGAAAAATTTGGGATCAGAACAAAAGCAGAGAATACCGAAAAACGCTGGCGTTATTAATAAGCAATTATCACAAAACTTTGGAGAGCGTTTCCTTGCATGTTATGTACAATAGcgaatttttggatgatttaattttGTCGTTAATTAGCAAATGTAGCAATTTGAAGTACTTAAATTTCCAAGGTATAATTGGAAGTATGGAGTTGTTAGCagaaatttgtaaatttcaGACGAAATCTATTGATACTGATGGTAGAACCATCTTGCCTCAACAAAGGAACCGCGGAATAAGGGGAAAATGGAGCGAAGAAAATTTGCAGCTTGCTATAGTAGCTGTTAGAGAGGGCATGTCTGGCCGTTTAGCTAGTAAGAAGTTTTTGGTACCTCGTCGAACCCTGCGAAATTACTTACAAAAGCAGCAAACATCAAAATGTTCTATGGGACGTAAAGTTCTTCTTAGTGAAAAACAAGAAAAAGATTTGTGTAAAAGTATAATTAGTTGGACTGAAACAGGgAATTCACGGATCCCACgaaaaagaattcgtacaacTAATAGGTCATCATACACCGCAGAGCAACTAAAAAAAGCTGTTGAAGAAGTTTTATGGCAAAGTCGTTCGATACGAAGTGTTTCCATTGAGTTCAACATTCCTAGAATTACATTAATCCGATATGTTGAGAAAAGTGGCAATCAAGACTTGGACTCGATTAATTTTCGACCAAGTAACGAGCATTTGATGGTTTTTACCCAAGATGAAGAGCTTCTTCTTAAGCAGGATCTAGAACATGCATGTGATATGCATTATGGCTTATCTGCTAAGCAAGGTCGTATCCTGGCCTACGAGTTTGCGGTGgctaataataaacaaaatattaaaagcaGTTGGTCTCGAGACGGCATGGCTGGAACAGAGTGGATGGTTAATTTCATGCGGAGAAACAACTTCTCTTTGAGAACATCTGAACAAACTGACTTGATCAAAGCGACCAGTCTCAATAGGaaaaaaaatatcgaaatgttttttaaaaatcttaggGAGATTAAAGCAAAGTATAATTTACAAGGTGAAGATATTTATAACCTAGATGAGACCGGCGTTACCACGGCACGTAAGCCCCCCAGAGTGCTAGCAACATCAGGCAAAAAAGTCGTAGGTCAGGTTACTTCTGCTAACAAGGGGGACGCTATTACGATTATAGGGATCATTGGCGCCACAGGACGCTGCGTACCACCTGTTTTAATATTTCCGCGTGTCCGTTTCAAAGAAAATATGTTGCTAGGTACTACGCCGGGTACGAAAGGTGTCGCAAATCCTTCAGGATCGATGAACAGTGGCTTGCTTCTACCTGTCTTGCAACATTTCGTACAACACGAAAAACCATCTAAAGAACGACCAAAGTTGATTATACTTGATAACCATGAGAGCCACATCAGCATTTCTGCCCTTAATTATTCCAAAGAAAATGATGTACTTCTTTTAACCTTGCCTCCGCATTGCGAAAAATTGCAACCTTTAGAGATTGGGGTATTTGGCCCATTCAGTACGTTCTACAATGGTGCTTGCGATAGGTGGATGATTAATCATCCAGGAAAAGCTATTACGGTATTTGAAGTCGGTAGCCTTATTGGGGAAGCTTTTTTACAAGCATTTACTCCCGAGTACATTTGCAGTGGATTCCGAGCTACTGGGATATATCCATTTAACAACGAAAGTTTTTCTGAAGATGATTTTTTGGACGATAGACCCGAGTCGCAACTTGATCCAAAATTTGAACTATCAATAGAAGAACCTCAATTATCACCACTGAGGGTGAAAGAAGAATTTAATTCTGAACCTGATTAG
- Protein Sequence
- MASFNDLPLDILTEIFSYLPRRERVACMMVCSFWKAAMDIPSIWRNVTVYLDSDLVESSTVMATKWYHKYFQSMEFCWSNPRLPTRWMQYDCQEFAKRACRYLILLQNSSIQLESVKIDDWYEVPKFKKVIYHLCKFLKSQECMSKVCFINVTFNKPECIKLLACCLSSIKTLKYLDISNCYHANPSMYEAVTFLSCLEHLSNLKVLKLDYTTLCGGVIDCIITSKNEQLDSLVVNLREYDYTLNLISDDAWICLKQQCPQVKVSFCIRNICHYEVIGRILNPAIPMYSFSLNCGKIWDQNKSREYRKTLALLISNYHKTLESVSLHVMYNSEFLDDLILSLISKCSNLKYLNFQGIIGSMELLAEICKFQTKSIDTDGRTILPQQRNRGIRGKWSEENLQLAIVAVREGMSGRLASKKFLVPRRTLRNYLQKQQTSKCSMGRKVLLSEKQEKDLCKSIISWTETGNSRIPRKRIRTTNRSSYTAEQLKKAVEEVLWQSRSIRSVSIEFNIPRITLIRYVEKSGNQDLDSINFRPSNEHLMVFTQDEELLLKQDLEHACDMHYGLSAKQGRILAYEFAVANNKQNIKSSWSRDGMAGTEWMVNFMRRNNFSLRTSEQTDLIKATSLNRKKNIEMFFKNLREIKAKYNLQGEDIYNLDETGVTTARKPPRVLATSGKKVVGQVTSANKGDAITIIGIIGATGRCVPPVLIFPRVRFKENMLLGTTPGTKGVANPSGSMNSGLLLPVLQHFVQHEKPSKERPKLIILDNHESHISISALNYSKENDVLLLTLPPHCEKLQPLEIGVFGPFSTFYNGACDRWMINHPGKAITVFEVGSLIGEAFLQAFTPEYICSGFRATGIYPFNNESFSEDDFLDDRPESQLDPKFELSIEEPQLSPLRVKEEFNSEPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -