Rlut004381.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- bab2
- Assembly
- GCA_958510855.1
- Location
- OY294036.1:58233609-58250994[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-15 8e-13 48.9 0.0 2 42 364 405 363 408 0.94
Sequence Information
- Coding Sequence
- ATGACTATGCAACAATATTGTCTACGGTGGAATAATCATcaaccaaattttatttcagtATTTTCCAGTCTTTTAAATAATGAATCATTGGTTGATGTCACTTTAGCTGCCGAAGGAAGACATTTACAAGCCCACAAAGTTGTTTTATCTGCATGCAGTTCATATTTTCAATCGCTCTTTACTATAAATCCTTGCCAGCATCCAATTGTTATCTTGAAGGatgtaaaatttttagatttaaaagTTATGGTTGATTTTATGTATTATGGAGAAGTTAATGTATCTCAAGATCAATTGCCACATATTTTAAAGACTGctgaaatgttgaaaattaaagGTTTAGCTGAAATCCCTGTAGAACAGTCCGCTCTTACCAAATCTCAGAGTAATTCAACTGAACGAGCAGAATTATTAACTCCCGGTGACTCCAATTGGAGTTCAGAAGATGTTCAAAGACAGTCTTTGTCATCTTCACCTTGTCCCTTATCACCTGCTAGTAAGCGTAAAAGACTAAGAAAAACCTCGACAGGTTCAGGTTCTGGGTCTACAGAAAGAATGTCTGAGGAACATGTAACAACTGAAGTAACTACAATGTCATCCCCCATGGGGAATACTCTTGGAACTGTGATAAAACCTGACCCAGGTAGTTTCATTACTGAAAGCAGTAACCCACTTCGCATTAAGCAACATAGTAGTGATTCAGAACTACAAAGAGGTAGTTCACACGAAAGTATCGAAGGAGAATCTTCTCATCAAATTACattgCAAATTCCCCAACAAGATATGTCCCACAAACTTGAGTCCACCATTGACATATCTGGAACGGCTTCGATTTCTCAATCTCAAAcagGATACCAATGGGGAATTATTGATGGATCTTATTCACGTTTTCCTCTTCCAACATGTCAACCCAATATTGCTACACAACTTGACCTCAATTACACTACCACAACAATACCTCAATGCACAATGGACAACAACTTAACGACTACTTCTGAAACATCCACAAGTACAGTTAATCAAAACCACATAGCGGTATCTCCAACTCAACTAATTCAAAAACGAAAAAGAAGCATTAACCCTCAATCTGATGAAAATTTTGTGCGTGCATTAGAAGCCGTGCGGTTTGGTGGAATTGGATTTTGTAAAGCTGCTAAAATGTATGGCGTCAATAATCGTACTCTGTGGTTGGAATACAAAAAAAGAGGATACCCTAACAATAGGATAAGTATTAAAAATCGTAAGCAGGAGTATATTAGCTCAGCCGGTGTTAATCAAAATCCTACGAGTCCTGTTGCTACTACCTCCAGTGATCAAGAAAACGACCTAATATGTGAAGCTGTCAATCATCCAACTACTGCTATTATTAGTGGAGCATATTTAGACAGTCGTCACGTTGATTTATCTCCCATTTTACCGAGACCTCGATATTTAGATACTGTTAGTGTTAATGCTCAACACACGTTGGGTTTATCGGGAGTCACTTTTGAACAAATTTATTTGTATTTTACAGAAAGAACATTAGCAACAACTCAAGCACAGTTAAAAGTAACACAAACGTTACAAAGTCATCAACTAGTAATGGGTACAAAACGTGGCAGGTTTTTAATGAGACAACCACGAATTAAACGAGAAAGTGATTCGAATCAAAATCCTGACGGAGATCCTTTAGCGTTTCAATATTTATCAGTACCTCCTTTAAGAATTGAAAGACAATCTTCTGATCCTCTACCTGCAATTTCACCACCACCTGGAAATTTATTAACCGTACCTGGTAGTAGTATGTTAGTTAAACAACATTCTCATCCTTTATTATTACCGAGTGAAATGCATCAGTTGACTTCTCATCATTCTTCTCCACTCCATATTCATGTAATACCAAGCACTTCAGCTTCTATTCATAGTGAAGCTGAGCGAGCAACAAGTCCTGTTGTAGTGGTCTCAGATCCTTATGGAACCTCACAAGAGTTACGTGGTGATACTGCTGCCAGTGTTACGTCTGCAACATTGCGAGTGCGAACAGACGAATTAAAAAGGAGTGCTTCTTCACCGcaggcGAGTACTCGATTAAGTCACTGTCCAGTGGTGAGACCAGGTCCTGCTTTAGGTTGTAATTATTGCTGGAACACTGTTGATACCCATGGGCGAATACTGAGACGTAAAACAAAATATCATTGTCCAGAAtgtcaaacaaatttgtgtatTGTTCCTTGCTTTCAAGATTATCATGAAAAACAGACAGTAGCACAAACAGATCCGCTCGCTCTTTCGACGACTACTGTAATGAGACCTATATTACCAAAAACAAGTTCAATGTGA
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNNESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFLDLKVMVDFMYYGEVNVSQDQLPHILKTAEMLKIKGLAEIPVEQSALTKSQSNSTERAELLTPGDSNWSSEDVQRQSLSSSPCPLSPASKRKRLRKTSTGSGSGSTERMSEEHVTTEVTTMSSPMGNTLGTVIKPDPGSFITESSNPLRIKQHSSDSELQRGSSHESIEGESSHQITLQIPQQDMSHKLESTIDISGTASISQSQTGYQWGIIDGSYSRFPLPTCQPNIATQLDLNYTTTTIPQCTMDNNLTTTSETSTSTVNQNHIAVSPTQLIQKRKRSINPQSDENFVRALEAVRFGGIGFCKAAKMYGVNNRTLWLEYKKRGYPNNRISIKNRKQEYISSAGVNQNPTSPVATTSSDQENDLICEAVNHPTTAIISGAYLDSRHVDLSPILPRPRYLDTVSVNAQHTLGLSGVTFEQIYLYFTERTLATTQAQLKVTQTLQSHQLVMGTKRGRFLMRQPRIKRESDSNQNPDGDPLAFQYLSVPPLRIERQSSDPLPAISPPPGNLLTVPGSSMLVKQHSHPLLLPSEMHQLTSHHSSPLHIHVIPSTSASIHSEAERATSPVVVVSDPYGTSQELRGDTAASVTSATLRVRTDELKRSASSPQASTRLSHCPVVRPGPALGCNYCWNTVDTHGRILRRKTKYHCPECQTNLCIVPCFQDYHEKQTVAQTDPLALSTTTVMRPILPKTSSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293984;
- 90% Identity
- iTF_01293984;
- 80% Identity
- iTF_01293984;