Rful016308.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996557.1:35238509-35247924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.32 9.2 7.8 1.5 1 22 270 291 270 293 0.89 2 13 0.011 0.31 12.4 0.1 1 23 346 369 346 369 0.96 3 13 0.0025 0.072 14.4 4.6 1 23 487 510 487 510 0.96 4 13 0.49 14 7.2 3.2 2 23 517 539 516 539 0.95 5 13 0.032 0.92 10.9 3.8 1 21 666 686 666 687 0.95 6 13 0.0026 0.076 14.3 2.2 2 23 699 721 698 721 0.94 7 13 0.45 13 7.3 0.6 1 23 724 747 724 747 0.95 8 13 9.6 2.8e+02 3.1 2.0 4 23 751 773 749 773 0.87 9 13 0.6 17 6.9 0.2 1 23 777 800 777 800 0.96 10 13 2.2 63 5.2 0.6 2 23 807 829 806 829 0.95 11 13 0.14 4 8.9 0.5 2 23 838 860 837 860 0.95 12 13 1.6 45 5.6 0.2 3 23 867 888 866 888 0.91 13 13 0.99 29 6.2 0.9 1 23 1158 1180 1158 1180 0.96
Sequence Information
- Coding Sequence
- ATGGATACGAAACTTTGCAGGATATGTGGAAAGCTGAGCGAAAACTACGTACAAATTTTTAAAACCGAAGGCTTGAAAAACAAAATTGAGACATGTCTCCCTATCATTGTTTCACCTCACTGTTTGCTCCCCGATACAATCTGCTCGGAATGTATGGAGAACGTAGGCAACTTTTACAGTTTCATAAAGAATTGTTTACAAAATATCATTGTGCTAGAGTCGCAGTACGACATAACGGAATCTTGTTTAAAAACAAAAAGAAAACACGAAAAAGGTTGTTTTACGAACATGAACCCGTTGAAGTTCGATAAAAATATTCAGACTGACGAAGATTTCACCGAAATGATCCTGCAACGGAAAGAATGTAAGGTTAACGTAGACGCGATAGAATTGGAAAAACTGAGTGTGGCGTTGCAAAACGCCGAAGATATTCTTAACGGGAGGGAAATTAAAGAGGAAGCTGTCAAGTCGCCAAATGTCAGTTTGGTTAGTTACGAGATGGAAACGGAAGACGAATGCGAATGGGATAATTTTGTTGTTAGTACACCAAAGATTAAGGAATCTGACAATCTGATCGATGAAATTAACATGAGGAAGAATTTAAAACGCACATGTGATACAATTTTACCGCACCGAACCAAAATATTTAAAATGGATACGTACAACAAACGTAAAAATAGGCGACCCAAAAAGGTACAAAGAAATGATAACGATTTTCCTAACCTCACTTTTAATAATTTGGAAGAAATCTACAAGAAAATGGAGAAAGACGGCCTCGGTACAACAAGCGATGGGAAAAGTTTGCTGCATTCCTGTTTAATTTGTGAAAGTCAGTTCTGTGATTCTTCTTCGTTGGTGGCTCACGTGTACGACATGCACGGTATCGACATGGCTCAGATTTCGTCATCTGAACCCATCTCGGAACGCAAGAAAAAGATTCCTAATTTGGTGAAAATCACCGACCTAAAGATGAAAAACGAAAGCCAAGACCTCAGAAAAGACTTGTTTGAAGAACCGCCCACCCTACAACCTACCTTCGTTTGTTCCTTATGTCCGGCAGTTGTAACCAACCGCACCGATCTCTTTGCACACCTGAAAAACAAACACCCGTACGAAGTCTCCCTCATGTGCGGGCTCTGCATGCAAGTTTCGACGACGTACGCCAACCTTACAAGTCACGTCACGACGTGCAAAGAGCAGCACACGGTTAACAGCCGCTTCATCTGTAAAATCTGTGCCTACCACGACGACAACGCTAAGGTCATGGAGAACCACGTTTCTGTTCACGAATTCGTGATCGAATTTTGCAAAGAGCAGCTACAAATGTACGATCCCAGTGATTACATCGAAATGAATCCCAACATCGAACACAAACTCCTCTTCTGCGGCGAATGCGATCACGCCGGCTTCTTAACATTCCAAGAATTTAGCACCCACCGTCGAAACGAGCACCAAATCTTCCACTGTGATCTATGCAACAAATTCTACGGCCGCAACTCGCACTTGTGGAAGCACGTCAATCGCTTACACAAAGGCCACCCTAACATAACGTGCCAGCTGTGTCTCAAAACCAGCGCATCTAAATATCATCTCTCGCAACACTTCAACAAAACCCACGTCCAAAAAACGTGTAAACAAAAGGCTAGCGAAACCGGGAGTGAAAGTTTCATGAAACAGAAGTTCAGTGGTTTCGATTTCCAATCTGTACGTCAGAGTTTCCTGCGCCAAGAGCTCGAAGAACGCGCCGATTGCGCTAGCGACGAAAACAATTCCGACGAAGAAGATTCACAAGCATACGGCAAAACCACCGATTTGTCCGACGACAGCAACGAACTCGTAGATTTCTCCAGTAACAATAAAAGTGCCATAAATTTGCAAAACGACACGAAACACGAGCAGTCCTCCTCGTTCACTCCACCCAAAGAAATCGACGCTTCAAGCAACCTCTACACGAACATAATCACGAATTACACTCCGCCCCAGAACGAGGGGAAGTACAAATGCCCGAAGTGTTACAAGGGTTTCCATAAAAAAATCTTGTTGAAAAAACACAAGAAGAACTGTCGGCCCCGATTGCAGAAAGACCTCCTGACGCGTTGTAAGACCTGCTCGCGGATTTTCAAAGACCGACAGAGTTTGACTAAACATTTGATTAACTACCACTCGGAGTACGCGTGCGAAATCTGCGGCCAGAAAGTGCAAAGTAAGTGCGAGATCGTGTCCCACATACGTTTCCTCCATCCAAACTGCCGTTTGTTCTGCCACTGTGGTAACATCTTACGGAGTCAGGTGGATCTGATGGAGCACGTCCGCGATCACCGCAACTCCTTCGTGTGTCAGTTCTGCGGCGACATGCTACCCACCAAAATCAAACTCAAAATGCACATTTTGAGCCTGCACCGCAAAATCCTCAGTTTAAGTTGCGGGATCTGTTTGAAACTTTTTGAAACGCAACACATTCTGCGTGATCACGTCCGTTACGTTCACAAAGACCAGTTGTTACCGATGACGTCGTGTACCGTTTGTGGGAAGAATTACGGTTCCAAGTGGAAAGCGTTTGACCACATCAACAAATCGCACGGTAGAATCTTCAAAGCCTGTAAAGTCTGCTTGGAAATTTTCGATACAGACGACCAACTTCGAATCCACTTCGAAAATTTCCACGCTAACCACATCTCGATGAGTAGTAGTAACAAAAGCATCGTCGGACAACACTCAAACTCGTTCGAACCAATTGCGAGCGGCTCGATTAAAAAGGAGAGCGAGAGCGATTTGGAACGGAATGAAAATAACGATAAACTATCATCAAGCGACTTGTCAAACGAGGAAGATGTTTCGGAAAATTACAACAACACGCAGATGGAACAAAACCTGAGCGAAGCGGAAGAGTTGTTACGCACGAAAATTCACGACAACTTGGAAACTTTAACGCGCGAAACGAAAATATCTTTACTGGAGAAGAGGCTTCTTGGAATTAAAAAATTGCCCGCGGAAACTAATAACGTCTATAACAGCGGCGTGCACGAAAAGAACGTCGTCACAAAGCCGAAAGCGCATTCTATGAACAACCAGGCATTTGTTTACAAGAAATCCAAAACGGAATTTTTGGAGGGTTCGCATTCGAAACCATCAAAAGATAAAAAGTCGAAATCGCACGATCAATCAAACTTTTTCAACATGAAACGCGAAATAGACGGTGACTACGATCAAAGCGTCAGCCATAATCCACTACAAAACAGTTCCAAGCGCACCGTCTACGTGAATAGCAACGACCCATCTTTGTGCGAAATTTGTTTCAAAACTTGGCCAGCCAAAAAGCATCTTTGGCAACATTACATCCGTTGTCATAAAACAGTTGCCGCGACGGTATGCGGAATTTGTTTAAAAACAAACGATTGCTACAAATCCCTCCAGACCCACTTAGTCGAAAACCATCCAACGTTACTCCACGGACAAGGATTTGGCTCAAATTTTATTTGTAGGATTTGCGGCCGCTACCACAACGCGAGTTCGAAACTTAAACTTCACATGGCCATACACGAAAATTTCGATTGGTCGATTTTGGAGGCGAACCACAACCCCGATGATGAACCTCCAAATAAAGTAACCAATAAAAAGAGTACGAATGGTTTTCCTGCAGACGATTACCTGCAGGACTACGCAAAAGATGACAAACGGTCTGATATTAACTATGAAAGCCTGATTGAACAGGTCGAGTGCTCGTCAAATTCCGACAACGATTCCGATGTGGAGGAATCAAATAAAGATGTACGTGAAACGATAAATTCGTCGTCCGATGACGAAAGCGACGAAATGTTGTCGGAAGATGACGAAAAGTTTATTGCGCCTCAAAATTGTAACGGAGAGCAAAGTATACCGGAAGTTAGGAAGGAGAAGTCGATCGAGGTGTCTGAAATTAAGTTGGAATTTTCGAGTTCTGAAAGCGACGATAGTTCGGATTCGAATCAAAGTATATCGGACACCGAAGTGGAAATGATGGATAACCCCACACAAATTAAAAGCAGTTCGGAGGACGAAAGCTCTCAGTTTTCGCAAGTATCCGATCAGTCGGATTTGAATTGTAAGTCTAATAATTTGGATAGTCAATCGAATCAGGATGCGGAGAACTCGAATATATTTGTGAGGAAGCCCGAAGAATTGGATTTTGCCATACGTTCGATAAGTTATGAACAGGTTACTGTGAAGAGTGAGCAGATTCGCGAAGATGTGTGTGAAATTCAATCGCACATTTTAAATCCTCATGAGTTACAGTCAGCTGTTGATAGCATACTCTAA
- Protein Sequence
- MDTKLCRICGKLSENYVQIFKTEGLKNKIETCLPIIVSPHCLLPDTICSECMENVGNFYSFIKNCLQNIIVLESQYDITESCLKTKRKHEKGCFTNMNPLKFDKNIQTDEDFTEMILQRKECKVNVDAIELEKLSVALQNAEDILNGREIKEEAVKSPNVSLVSYEMETEDECEWDNFVVSTPKIKESDNLIDEINMRKNLKRTCDTILPHRTKIFKMDTYNKRKNRRPKKVQRNDNDFPNLTFNNLEEIYKKMEKDGLGTTSDGKSLLHSCLICESQFCDSSSLVAHVYDMHGIDMAQISSSEPISERKKKIPNLVKITDLKMKNESQDLRKDLFEEPPTLQPTFVCSLCPAVVTNRTDLFAHLKNKHPYEVSLMCGLCMQVSTTYANLTSHVTTCKEQHTVNSRFICKICAYHDDNAKVMENHVSVHEFVIEFCKEQLQMYDPSDYIEMNPNIEHKLLFCGECDHAGFLTFQEFSTHRRNEHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPNITCQLCLKTSASKYHLSQHFNKTHVQKTCKQKASETGSESFMKQKFSGFDFQSVRQSFLRQELEERADCASDENNSDEEDSQAYGKTTDLSDDSNELVDFSSNNKSAINLQNDTKHEQSSSFTPPKEIDASSNLYTNIITNYTPPQNEGKYKCPKCYKGFHKKILLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLTKHLINYHSEYACEICGQKVQSKCEIVSHIRFLHPNCRLFCHCGNILRSQVDLMEHVRDHRNSFVCQFCGDMLPTKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRYVHKDQLLPMTSCTVCGKNYGSKWKAFDHINKSHGRIFKACKVCLEIFDTDDQLRIHFENFHANHISMSSSNKSIVGQHSNSFEPIASGSIKKESESDLERNENNDKLSSSDLSNEEDVSENYNNTQMEQNLSEAEELLRTKIHDNLETLTRETKISLLEKRLLGIKKLPAETNNVYNSGVHEKNVVTKPKAHSMNNQAFVYKKSKTEFLEGSHSKPSKDKKSKSHDQSNFFNMKREIDGDYDQSVSHNPLQNSSKRTVYVNSNDPSLCEICFKTWPAKKHLWQHYIRCHKTVAATVCGICLKTNDCYKSLQTHLVENHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFDWSILEANHNPDDEPPNKVTNKKSTNGFPADDYLQDYAKDDKRSDINYESLIEQVECSSNSDNDSDVEESNKDVRETINSSSDDESDEMLSEDDEKFIAPQNCNGEQSIPEVRKEKSIEVSEIKLEFSSSESDDSSDSNQSISDTEVEMMDNPTQIKSSSEDESSQFSQVSDQSDLNCKSNNLDSQSNQDAENSNIFVRKPEELDFAIRSISYEQVTVKSEQIREDVCEIQSHILNPHELQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00272062;
- 90% Identity
- iTF_00272062; iTF_00270612; iTF_00269326; iTF_00273208;
- 80% Identity
- -