Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0016 0.046 15.0 2.0 2 21 117 136 116 137 0.94

2 6 3.3e-07 9.5e-06 26.6 0.3 1 23 168 190 168 190 0.97

3 6 0.59 17 6.9 0.8 3 23 198 221 196 221 0.94

4 6 0.0073 0.21 13.0 2.4 1 23 227 249 227 249 0.97

5 6 3e-05 0.00088 20.4 0.8 1 23 255 277 255 277 0.98

6 6 2.2e-05 0.00064 20.9 1.1 1 23 283 306 283 306 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0016	0.046	15.0	2.0	2	21	117	136	116	137	0.94
2	6	3.3e-07	9.5e-06	26.6	0.3	1	23	168	190	168	190	0.97
3	6	0.59	17	6.9	0.8	3	23	198	221	196	221	0.94
4	6	0.0073	0.21	13.0	2.4	1	23	227	249	227	249	0.97
5	6	3e-05	0.00088	20.4	0.8	1	23	255	277	255	277	0.98
6	6	2.2e-05	0.00064	20.9	1.1	1	23	283	306	283	306	0.95

Coding Sequence: ATGTCAGAATCTGAAATAAATAATCCTAATATTTTTATCAAGGTACACCGTATATCCAGTGATGGTACAGTTAGCTCTTTTCAAATTGAAGAAGATTTTGTCACCAAAAAATTAGTGTCCAAAACTCCAATTTCTAGTGAAAATGTGAACTGGAATTCAACATTTGGTAAAAATTGTGCAAACGATGTCGATAAAGTGAACTCAATTGTTCCATACGTGGATGCTAACGACAAACCTGTTACTATGGTCAACATTGGAGATGTAGAAAATTTAAATTTATTACCTTACTCTACACATGGTATGGAATCAAGTCACAAAACCAGAATTCCGGTCATACCAATAATGATTAGATGCCAAAAGTGTGACATTAATTTTCCTACTAAAAAGCAGTTAGAGCATCATCTGTGCGAATTTACTGCAGACCAACTGGTACTTGACAGTGAAAAATCTTCAAAAAAATCGTTGGTTACTCATGGCAGACTTCAGCAAAATTTGAAATCTTATGTGTGCGAGATATGCGATAAATCCTTTGCTCAAGCATCATACTTATTGCAGCATATGCAGTTTCATCAAGATATTAAGCGGTTTGGTTGTCATCATGAAGGATGCGAAGCACGTTTTTCAATATTAATAGATTTAAATGATCATGTGCGTAAAATTCACACTCATGAAAGACCGTTTAAGTGTACAGTCTGCAATAAAAGTTTTCTTACTAAATCGGTTTACTACCAGCATCGTCTTATACATACCAACGACCGAAGATACAGCTGTGAGATTTGCGACAAAAGATTTTTGAGAAGCACTGCTCTAAAAAATCATCTCAAAATACACACCGATGAAAGACCATTTCTGTGTGAAATTTGCGGAAAAAAGTTTCGTCAAAATGGAGATCGAAATAAGCATGTAAAAACCATGCATCCGGATTCACTTTAA
Protein Sequence: MSESEINNPNIFIKVHRISSDGTVSSFQIEEDFVTKKLVSKTPISSENVNWNSTFGKNCANDVDKVNSIVPYVDANDKPVTMVNIGDVENLNLLPYSTHGMESSHKTRIPVIPIMIRCQKCDINFPTKKQLEHHLCEFTADQLVLDSEKSSKKSLVTHGRLQQNLKSYVCEICDKSFAQASYLLQHMQFHQDIKRFGCHHEGCEARFSILIDLNDHVRKIHTHERPFKCTVCNKSFLTKSVYYQHRLIHTNDRRYSCEICDKRFLRSTALKNHLKIHTDERPFLCEICGKKFRQNGDRNKHVKTMHPDSL

Sequence clustering based on sequence similarity using MMseqs2