Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996555.1:919695-923901[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.013 0.39 12.1 0.1 1 23 328 351 328 351 0.96

2 10 0.089 2.6 9.5 2.2 1 23 357 379 357 379 0.97

3 10 5.8e-06 0.00017 22.7 0.5 2 23 450 471 450 471 0.98

4 10 6.7e-06 0.00019 22.5 3.4 2 23 610 632 610 632 0.96

5 10 0.015 0.43 12.0 5.5 1 23 638 660 638 660 0.99

6 10 1.4 41 5.7 0.3 2 23 665 687 664 687 0.87

7 10 0.0029 0.085 14.2 2.8 2 23 694 715 693 715 0.97

8 10 0.00089 0.026 15.8 0.8 1 23 721 743 721 743 0.95

9 10 0.51 15 7.1 3.3 1 21 747 767 747 769 0.95

10 10 0.028 0.8 11.1 1.8 1 23 779 802 779 802 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.013	0.39	12.1	0.1	1	23	328	351	328	351	0.96
2	10	0.089	2.6	9.5	2.2	1	23	357	379	357	379	0.97
3	10	5.8e-06	0.00017	22.7	0.5	2	23	450	471	450	471	0.98
4	10	6.7e-06	0.00019	22.5	3.4	2	23	610	632	610	632	0.96
5	10	0.015	0.43	12.0	5.5	1	23	638	660	638	660	0.99
6	10	1.4	41	5.7	0.3	2	23	665	687	664	687	0.87
7	10	0.0029	0.085	14.2	2.8	2	23	694	715	693	715	0.97
8	10	0.00089	0.026	15.8	0.8	1	23	721	743	721	743	0.95
9	10	0.51	15	7.1	3.3	1	21	747	767	747	769	0.95
10	10	0.028	0.8	11.1	1.8	1	23	779	802	779	802	0.96

Sequence Information

Coding Sequence: ATGTATTACATGAAAGATTTTTGTCGCGTGTGCCTACGCTCCGAAGATTGTATGCAAGATGTAAAAAAAAATTTAAACGAAGAAAATTGCGATACACTACTAAATAAGTTGCAAACTTGCATTTCGGAAGTGGAGTGGTCAACAATGAGGCGCATTTTCATGTGTAATTTGTGTGTTGACCGCTTAAATTCGGCTTTCGAATTTAAACGTCAGTGCTTGGGTACCACCAAAATTCTCCAAAGTTACACTTCGCAATTGGAAAAGAGCAAAAGCGAATTTAAAAAAATTGACGTTCAAGTATCGAGGAAAGATATCGGACAGGAGATTATTGACAAATATATTAAACAACAAGCAAAGAAATCAAAACCTCGAGGCAAGTTACAAAAAGCTTTACAGGTTGCCCCCGCCATTAAACATTTTCTTCCCACCATACCAAGTTTAATAGTAGCTCCTAACAATAACAACGACATAAACCAGAATACATTCCAAAACATTTTTTTAAATTTAATACCGTCACCTAAAGTAAAGCCGAATTCTAAGGAAAAGCCTGTTAAACAGGCCCCAAAAAATAACAGCGTCTACATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAATATTTTGTCACAAATAGCAGCAACTCCTAACGCCACAAGTTTATTAAATGGAACAACTCAAATGGAAGAGTTAAGTGTGGAATTGGACCCCAGCATGTTTGATTGTACACCGGAAGTGGAGAGTATTGAAATTCCGGACAGCGAAGGAAACGATTGGGAAGATTTAATTTCCACCAATAAAATTTGTCCTAGCAGCACTGTACCCCCTACCAGCGCCCCCGAAAAAATGAGTCCACCTGTGTTACTTCCAAATGAAGTACAACCAAACCTAGAAGACTATTTTAACATAGACCACTTTATGGCACCGAAGGAAGCAAATCCAAAAGGTCCTCCTAAAAGTTTTCCGTGTGTACAGTGTGGAAAAGTTTCAGAGACTTTCAAAACTTTAATCGATCACATAAACCAAGTTCATGGGGGTAGATTTCCATACAATTGTACTCACTGTTCTGCTACCTTTGCTCTAACTGCTCATTATGAAATGCACATTCAAGAGCACGCTCGATTTTTCTCGAATCCCCTGCACAAAGACATGCTGACTTTGGAAGATGTATCGATTCAGAACGAATCGATGTTGTTTCCCAAAACAAATATAATTATTGATGATGACTCTGACTGTGATATAAAATTTGTCGATTCCATAGGTAACTTTCCAAGACCTAAAAAACTTGCAAGGGGGAAGTATTTTGTTAAGGGGGTGAAAAATGCCAAGTGTCCCATTTGTGAGCGCGAATTTTCTACCAACTCCTACTTGCAATCGCACATTAAATTGCACTACAGGAAAAACGACCACAGACTTAAAGTTTATGATGAAAGCAACAAGAAATCTTCTTTCCTTGAAATTGATTTTGAAAACGAAATATCAAAGTCGGAAATATTAATCGAAAATGGTACGAAATTGCCTGAATCCGCTGTTCCAACTAGCAATTTGAGAACTTTGCTGGAAGGAAAAAACTTGAAGGAAGCGGAAGAAATGATGGAAGATTGCGAAGAGGTTGGTTCTGAGGCTGTGAGTCAATTTCAAGTTGGCGAAGTGGTTGAGGATGGTCTAAATCCACCGAGTGATGCATCTGCCGATAATAGTATGGACTGTGATGCACACTTGGACGGAAGTGATCCAATCAAAGAAGAGGAATCGCCTGAGCGACGCCCTCCTTACCTTCAATTAACCACCGAAGGTGGAAAGCCACAATGCAACATTTGTTTTAAAGTGTTTAGTAGGAGGCACGATTTGAAGAGGCATATGAACAATATTCATTTAAAAACAATACAATATACTTGTCATTTATGTAACAGTTACTTTTATGAGGCATTCCATTTGACAAGGCATTTGCGTATTCACGTAGGTTTTGTAAAGTGTACCATTTGCTTTAAAGATTTTAGTGCGGTACGCGATTTGAAGTTTCATATTATGGGCTCCCACGATAACTGTGCTTCGGGTCAGTGCGGGATGTGCGGGCAACATTTCCAAAGAATTAAGCATTTGCGCGAGCACATGCAAGAACACGAAAATAGCATTTTGTATAAATGTCATATATGTGGGGACGAATTTAGAGAATCGCGTGAACTGACCAGGCATTTAGTTGGTCACAGTGGAATGTATTCGTGCAGTTTATGCGCAACAACTTTATCCAACGAACACGAACTTAGCAATCATATGAAGTGTCACAATGAATTTTCGCAAACAGAAAGAAAATATGCGTGCTCATTTTGTAGTAATAGATACAAAGAAAAAAGGTATTTAAATTTACACATGAGAAATGTACATCCAGTAGAATACGAAAATATTTAA
Protein Sequence: MYYMKDFCRVCLRSEDCMQDVKKNLNEENCDTLLNKLQTCISEVEWSTMRRIFMCNLCVDRLNSAFEFKRQCLGTTKILQSYTSQLEKSKSEFKKIDVQVSRKDIGQEIIDKYIKQQAKKSKPRGKLQKALQVAPAIKHFLPTIPSLIVAPNNNNDINQNTFQNIFLNLIPSPKVKPNSKEKPVKQAPKNNSVYMXXXXXXXXXXXXXXXXXTNILSQIAATPNATSLLNGTTQMEELSVELDPSMFDCTPEVESIEIPDSEGNDWEDLISTNKICPSSTVPPTSAPEKMSPPVLLPNEVQPNLEDYFNIDHFMAPKEANPKGPPKSFPCVQCGKVSETFKTLIDHINQVHGGRFPYNCTHCSATFALTAHYEMHIQEHARFFSNPLHKDMLTLEDVSIQNESMLFPKTNIIIDDDSDCDIKFVDSIGNFPRPKKLARGKYFVKGVKNAKCPICEREFSTNSYLQSHIKLHYRKNDHRLKVYDESNKKSSFLEIDFENEISKSEILIENGTKLPESAVPTSNLRTLLEGKNLKEAEEMMEDCEEVGSEAVSQFQVGEVVEDGLNPPSDASADNSMDCDAHLDGSDPIKEEESPERRPPYLQLTTEGGKPQCNICFKVFSRRHDLKRHMNNIHLKTIQYTCHLCNSYFYEAFHLTRHLRIHVGFVKCTICFKDFSAVRDLKFHIMGSHDNCASGQCGMCGQHFQRIKHLREHMQEHENSILYKCHICGDEFRESRELTRHLVGHSGMYSCSLCATTLSNEHELSNHMKCHNEFSQTERKYACSFCSNRYKEKRYLNLHMRNVHPVEYENI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294378;
90% Identity: iTF_01294378;
80% Identity: -