Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:110952303-110955285[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0014 0.04 15.2 1.9 1 23 179 201 179 201 0.98

2 9 0.00043 0.012 16.8 1.6 1 21 207 227 207 228 0.88

3 9 0.00052 0.015 16.5 0.7 1 23 257 279 257 279 0.98

4 9 3.7e-06 0.00011 23.3 2.8 1 23 285 307 285 307 0.98

5 9 0.0041 0.12 13.8 4.1 1 23 394 416 394 416 0.95

6 9 1 30 6.2 3.4 1 23 422 444 422 444 0.97

7 9 0.00031 0.0088 17.3 0.6 1 23 450 472 450 472 0.98

8 9 0.0077 0.22 12.9 3.8 1 23 478 500 478 500 0.98

9 9 0.017 0.49 11.8 0.7 1 23 506 528 506 528 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0014	0.04	15.2	1.9	1	23	179	201	179	201	0.98
2	9	0.00043	0.012	16.8	1.6	1	21	207	227	207	228	0.88
3	9	0.00052	0.015	16.5	0.7	1	23	257	279	257	279	0.98
4	9	3.7e-06	0.00011	23.3	2.8	1	23	285	307	285	307	0.98
5	9	0.0041	0.12	13.8	4.1	1	23	394	416	394	416	0.95
6	9	1	30	6.2	3.4	1	23	422	444	422	444	0.97
7	9	0.00031	0.0088	17.3	0.6	1	23	450	472	450	472	0.98
8	9	0.0077	0.22	12.9	3.8	1	23	478	500	478	500	0.98
9	9	0.017	0.49	11.8	0.7	1	23	506	528	506	528	0.98

Sequence Information

Coding Sequence: ATGATGGAACAGTTAGAAAATGTAATGTGGGATAAAGAGAAATCTACAAGAATAGCCGAAAGGTTTAAATTTTTTAAAAGAGACCAATTGAAAGAGGAAACTATTGCAATTTATTTGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGACGAAATCATTCAAGCAGATTTATTAACAAAACATTATTTGACTCTCGACGATGCTTATCAATATGCTCTAACCATGGAAGTAGTGAGGTGTTCCGACGAGAGCAAACCAGCTTTAATAAGTCACAAAGAAGAAGAGGATGAACGAAGTAACGGCGATGATTTTGAAAATTGTCATTATTCGCTTGACATTAAAGAAGAGCTGGAACCTTTCGAACAAGAAGAATTTGAAATACAACAGGAATTTATTGACTTTCGGAGTGAATCGAATTTATTAATCGAAGCTGAATGTGATCAACAGCTACTACAACTGGGCGATGGTAAGAAAAAGTTTGAGTGTGAATTTTGTCAGAAAACTTTTATGATAAATTCGCGTTTGATGGATCATCGAAGAACCCATACGGGAGAGAAGCCGTTTATTTGCATAACTTGCAACAAAAGCTTTTCAAGAAAGGAATCTTTACGCCGACACACAAAGAAATTGTCTGGGTGTGCAGAGTATGACAAACAAAAATTGACGTTTGAAAAACCTGTTAAAGTTAAAACCGAGAAGAAAAAGGTGGATTATGTATGTGCTGTTTGTTGTCGTGCTTTTCCACAAAAGGCTATGCTAAAACGGCATTTGAGAATTCACACAGGTGAGAAACCTTACGAATGTTCAATCTGTAAAACAAGTTTTAATAGAAAATCAAGTTTAAAACGACACTTTCAAATTCATGGGTTTGAAGATCATCATTTTAATAATTCTCTCAAGAAGGAAACACTCAAATGTCAGACCTTTTTGAAGAAAACAAACTTGGAAAGGCATTTAAAAAGTCAGGCAGGAAATGGAAATTCTAATGAGAAAATTAATTTGTTAGATAAGGAAGATACTAAAACGGAAGTTATGGATACTTCAACTATCGACTCAGATAAAAGAGAACTATTGGAGAAACAAATTTCACTGCCGAAAGAACCGAGAAAACGGAATAAATCGTTTTTATGTCATATGTGTGATTACAGAACATACAAAAACTATATGTTAGAACGACACATAAAGAGACACACAGATGAAAGACCATTTCCATGCGACATGTGCAGCTACAAGGCAGTTTGTAAAAGTCACTTAAATATTCACAAAAGAGTTCACAGCACTGAAAAATTGTTTATCTGTGAAATTTGTGGCTATAAAACTAACTACAGTGACAAGTTGCAAGTACATAAAAGAATACATACAGGCGAAAAGCCATTTCAGTGTAAATTTTGTGATTATAAATGCGCCGAAAGAAATTCATTACGAAACCACGAAAGGATTCATACAGGAGAGAAGCCATTTTCCTGTAACTTTTGTGATTATAGAGCAGCTCAAAGGACCGGTTTAGTTTATCATTTGAAAACTCACAAAAAGGAGAAACCTTTGGTCACAGAAAAGCTAATAAAAACTAATAATTAG
Protein Sequence: MMEQLENVMWDKEKSTRIAERFKFFKRDQLKEETIAIYLDXXXXXXXXXXXXXXXXXXXXXXXXXXXQDEIIQADLLTKHYLTLDDAYQYALTMEVVRCSDESKPALISHKEEEDERSNGDDFENCHYSLDIKEELEPFEQEEFEIQQEFIDFRSESNLLIEAECDQQLLQLGDGKKKFECEFCQKTFMINSRLMDHRRTHTGEKPFICITCNKSFSRKESLRRHTKKLSGCAEYDKQKLTFEKPVKVKTEKKKVDYVCAVCCRAFPQKAMLKRHLRIHTGEKPYECSICKTSFNRKSSLKRHFQIHGFEDHHFNNSLKKETLKCQTFLKKTNLERHLKSQAGNGNSNEKINLLDKEDTKTEVMDTSTIDSDKRELLEKQISLPKEPRKRNKSFLCHMCDYRTYKNYMLERHIKRHTDERPFPCDMCSYKAVCKSHLNIHKRVHSTEKLFICEICGYKTNYSDKLQVHKRIHTGEKPFQCKFCDYKCAERNSLRNHERIHTGEKPFSCNFCDYRAAQRTGLVYHLKTHKKEKPLVTEKLIKTNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -