Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996555.1:79784190-79786454[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.022 0.64 11.4 2.5 1 23 419 441 419 441 0.97

2 10 6.7e-05 0.0019 19.4 0.5 1 23 447 469 447 469 0.95

3 10 0.0033 0.094 14.0 3.1 1 20 482 501 482 503 0.94

4 10 0.0015 0.043 15.1 2.5 1 23 510 535 510 535 0.95

5 10 0.012 0.34 12.3 0.1 3 23 543 563 542 563 0.96

6 10 4.7e-05 0.0013 19.9 3.8 1 23 569 591 569 591 0.97

7 10 6.3e-05 0.0018 19.5 0.3 1 23 597 619 597 619 0.97

8 10 1.8e-05 0.00052 21.2 0.7 1 23 625 647 625 647 0.98

9 10 9 2.6e+02 3.2 1.8 2 23 655 674 654 674 0.77

10 10 0.00042 0.012 16.8 2.3 1 23 680 703 680 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.022	0.64	11.4	2.5	1	23	419	441	419	441	0.97
2	10	6.7e-05	0.0019	19.4	0.5	1	23	447	469	447	469	0.95
3	10	0.0033	0.094	14.0	3.1	1	20	482	501	482	503	0.94
4	10	0.0015	0.043	15.1	2.5	1	23	510	535	510	535	0.95
5	10	0.012	0.34	12.3	0.1	3	23	543	563	542	563	0.96
6	10	4.7e-05	0.0013	19.9	3.8	1	23	569	591	569	591	0.97
7	10	6.3e-05	0.0018	19.5	0.3	1	23	597	619	597	619	0.97
8	10	1.8e-05	0.00052	21.2	0.7	1	23	625	647	625	647	0.98
9	10	9	2.6e+02	3.2	1.8	2	23	655	674	654	674	0.77
10	10	0.00042	0.012	16.8	2.3	1	23	680	703	680	703	0.97

Sequence Information

Coding Sequence: ATGTCTGATAAAGCTTATCAAGAAAATATGTTGGATAATTTCACCCGAATGCCTTGTGCACAACAAACCCAGAACAGTGTTCAACATTATACTCCTTCGTATACTTCAGGGATCATTAATAACAGTTACAATATGCAGAGTTACAACATGTGCGATTACATTTATGGGCCCCAAACGGTTAATAGAAATCAAAATGTTTGTCAAACTTCTTACTCAAACTGTTCGGATCAATTATTAGAAACGCCTCAATGGATTGCCGATCCTCGTGCAGTTGCCGATATCGAAAGGGGTTTAAAGTTTACCGATAAAATTGAAACCATTGAAATAACTAGTAAGGACTTAAGTCCGGCCAGTTGTTGCAGTAACGTCGATCTTCTTATTCCTGATGTATACAAAAGTATTAGCAAGGATTTTTATTATAAGCCTACAAATAACGAATCGCAGTGGTATTTAAATTCAAACTGTAACAATCAAAGGTACGTTGATTATCCTTCATGTTCTCAGTTTAATACGGGTAATAATTACATGATGGTGGACGATAGATCAACTAAATGTGCTCAGGACAGTTTTTCTGTCAAGGCTTGCTCGTACGGTAATGCAGTGGAACCTCTTCAGTTTATCGATTATGACAAACAAATTACCGATAAAACGTATTGTCATGATAATGCAGGCAGTGAACAACTATTTGGGGACTTAAATACTGATCAATTTTATGGTTCAAGTGCGACAATATGTAACGATACATTGTCATTTGTAGATATGGATAACTTGAGTCAACAGATCGTAGGTGATTGTTCGAATGATGAAAGTGATATTATTGTCGAAGAATCGGACGAAGAGGTGACGGATTACAGTGAAGATTTGGAACGTAAATATGATTATTGTACTAATTGTATCATCTGTGATACAGTTTACAATCCTGTTGGTAGTCAATTTTATATTTTAAATCCAGAATCACCGTTAACAATGACATCCCAGAAGTCGGTGTTTGATAAACTGATTAATATAGTCGGACCTTTACCTAAAAAGCGTAACTACATGTGTGACCAATGTTTAAGTTTAATTAACACAATTGACCATTTAGAATTAAAACTTCAGAGTACTAAAATTGACTTATTAAATAAATATGAAAAGACTTGTAAAGAAAATAACGTTCCAAGTGCCGCCACTAATCAAACTAGCGCACAAGTAGTGGTGACGAAACCTAAAAATCGTACCCATAAGAAATTCAAAAATTTTTGTGGAATTCACAGTTTTGCATGCAAATTGTGCAAAAAGCTATTTTCTATAAAAAAGTTGTATAGAATCCACATGACCAAGCACACCTTAAAAAATCGCTTCTTATGCGAAGTTTGCGGCAGAAGATTTTCCAACTTGGCCAATTTTAAACTGCATCTCAAAGGTCACGACAAAAAAGGAGAAACTCCCAAAACCGTGTTTGCATTTTCGTGTAAATCATGTAAAAAGTTCTTCAGAACAAATTCGAAATTGAAAGAACACGAAAATTATTGTTTGGGAATTTTACCTTTTGTGTGCAAATTTTCAAATTGCGACAAAAAATTTGCAACAGCAACCAAGCTTAAAAATCACACTAAACTTAAACACGATCAGAAGTTTACGGCCATTTGTTCGATATGCAACATAGGTTTTGTGAAATTGTCGGATTACAAAGCTCATAAAGTGACGCACAGCACCGAAAAGAAATTCAATTGTACAAAATGCGAAAAGAGCTACAAAACACTGAGCAATTTAAATTATCACATGAAGTTTCACAACGATAAATTACCGTTTATATGCACAATTTGCAATAAAGGGTTTATGCGTAAGGAATATTTAGAAGCACACGTTAATAATCATAAGGGATTGAAGAATTATACTTGCCAGCTTTGCGGGAAAGCGTTTGTCTCTCAAAAGAATTTAGACTCTCACGTTAAGTACCATGAAGGCAACATTAAGAAGAAAGTTTGTAATATTTGCAATAAGTCGATTACGACAGGTTTTGAAGAACATTTGCGTACTCACGGTAATTTGAAAGAATTTGAGTGTCAATTTTGTCAGATGAAATTTAATACGAAAGGTGCATTAAATAAACATGTTAAAAGAAAACATTCGTGA
Protein Sequence: MSDKAYQENMLDNFTRMPCAQQTQNSVQHYTPSYTSGIINNSYNMQSYNMCDYIYGPQTVNRNQNVCQTSYSNCSDQLLETPQWIADPRAVADIERGLKFTDKIETIEITSKDLSPASCCSNVDLLIPDVYKSISKDFYYKPTNNESQWYLNSNCNNQRYVDYPSCSQFNTGNNYMMVDDRSTKCAQDSFSVKACSYGNAVEPLQFIDYDKQITDKTYCHDNAGSEQLFGDLNTDQFYGSSATICNDTLSFVDMDNLSQQIVGDCSNDESDIIVEESDEEVTDYSEDLERKYDYCTNCIICDTVYNPVGSQFYILNPESPLTMTSQKSVFDKLINIVGPLPKKRNYMCDQCLSLINTIDHLELKLQSTKIDLLNKYEKTCKENNVPSAATNQTSAQVVVTKPKNRTHKKFKNFCGIHSFACKLCKKLFSIKKLYRIHMTKHTLKNRFLCEVCGRRFSNLANFKLHLKGHDKKGETPKTVFAFSCKSCKKFFRTNSKLKEHENYCLGILPFVCKFSNCDKKFATATKLKNHTKLKHDQKFTAICSICNIGFVKLSDYKAHKVTHSTEKKFNCTKCEKSYKTLSNLNYHMKFHNDKLPFICTICNKGFMRKEYLEAHVNNHKGLKNYTCQLCGKAFVSQKNLDSHVKYHEGNIKKKVCNICNKSITTGFEEHLRTHGNLKEFECQFCQMKFNTKGALNKHVKRKHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294353;
90% Identity: iTF_00273090;
80% Identity: -