Rful011133.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:102571067-102573947[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0004 0.012 16.9 0.6 1 20 87 106 87 109 0.93 2 9 0.0032 0.093 14.1 1.4 1 23 115 137 115 137 0.97 3 9 4.5e-05 0.0013 19.9 0.3 1 23 143 165 143 165 0.98 4 9 0.00077 0.022 16.0 5.5 1 23 171 193 171 193 0.98 5 9 0.0023 0.067 14.5 2.4 1 23 199 221 199 221 0.96 6 9 0.00081 0.024 15.9 0.9 1 23 227 249 227 249 0.98 7 9 0.0017 0.048 15.0 2.2 1 23 255 277 255 277 0.97 8 9 0.0017 0.049 14.9 2.5 3 23 285 305 283 305 0.98 9 9 1.2 35 5.9 0.4 1 14 311 324 311 326 0.87
Sequence Information
- Coding Sequence
- ATGGAAGAAGATAGCAACGACCATATTTTTGATTTCTTTGAAGAAGCAGGAAATGATTACTCTGGTTGGAAAATTAAAATGGAAGATTCTGATGATAACTCATCAAATATGCAGAATTCCGTCGACGTTAAAGACGAAGAAAGTTTGCTGGACATGCCGAGTGCTTGTTTGAGTGAAATCGAATTCTGCAAGTTTGAAGCGCCGTTGCTGCCACAAAACGAACAAAACTGTGCAGTCGATGACTGCGCAGTTACAAAATTCTACTGTTACGACTGCGACGCGGAATTCCAACAAAAGTCTGATTTGAAAAGGCATCTGCCAGTTCACTCGCTGAAAAAGCGATTTGCATGTGACATTTGTGATTATAGAACCATAAAGCAATGTTTTTTAGAAACGCACATACGAATTCACACCGGAGAAAAGCCGTACGCATGTCGCTATTGCGATTATACAACCGCGAGAAAAGGCGACCTTCAAGTGCATGTGAGGAGCCATACGGGCGAAAAACCGTACTCATGTAAACTTTGCGATTATAAGTGCACAGCAAGAAGTCACCTTAACACTCATTTGAGGGTTCATACCGGTGAAAAGCCATTTTTCTGTGAAATATGTGATTACCGAAGCGCCAAAAAAAGTCACCTCCAAGAACACTTTCAAATTCACACGGGTGAAAAACCGTATTCCTGTGAAATTTGTACTTATAAAACCACAATTAGACGTAACCTGCAAGAACACTTAAGAATTCACACCGGTGAAAAACCATTTACGTGCCACATCTGCAGTTACAAAGCGGCACGAAAGAGTAGCTTACAAGAACATTTAACGAATCATACGGGAGAAAAACCGTTTGGCTGCCAGATCTGCGATTACAAAACTACAAGAAAAAACGATTTACACAAGCACGTTAAGATTCACACCGGCGAGAAGCTGTTTTCTTGTGAAATTTGCGGTTACAAAACCATCAGGAAAAGGGACACTATTTTACCGATTACCAAAGAAGAAGATAGAAGAAACGACGATCCACAACCTGCTATAGAAGACGGACCGAAAGATCATGGACCTGGCAGAATTGGTAGACAAAGAAGAACTGATGAGATATCTGAGAAGATATGTTGGAAAAGAGAAACACACAGACGGCGGTCTTTAGTAGCGATAACGCTAGTGCCGAAAACCTATCAAAGCTGA
- Protein Sequence
- MEEDSNDHIFDFFEEAGNDYSGWKIKMEDSDDNSSNMQNSVDVKDEESLLDMPSACLSEIEFCKFEAPLLPQNEQNCAVDDCAVTKFYCYDCDAEFQQKSDLKRHLPVHSLKKRFACDICDYRTIKQCFLETHIRIHTGEKPYACRYCDYTTARKGDLQVHVRSHTGEKPYSCKLCDYKCTARSHLNTHLRVHTGEKPFFCEICDYRSAKKSHLQEHFQIHTGEKPYSCEICTYKTTIRRNLQEHLRIHTGEKPFTCHICSYKAARKSSLQEHLTNHTGEKPFGCQICDYKTTRKNDLHKHVKIHTGEKLFSCEICGYKTIRKRDTILPITKEEDRRNDDPQPAIEDGPKDHGPGRIGRQRRTDEISEKICWKRETHRRRSLVAITLVPKTYQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271795;
- 90% Identity
- -
- 80% Identity
- -