Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996558.1:2022213-2023503[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.6 2.8e+02 3.1 5.8 1 23 147 169 147 169 0.96

2 7 0.00077 0.022 16.0 0.1 2 23 176 196 175 196 0.96

3 7 0.00079 0.023 16.0 0.1 3 23 203 223 202 223 0.97

4 7 8.2e-06 0.00024 22.2 2.0 1 23 228 250 228 250 0.99

5 7 3.1e-05 0.00088 20.4 0.8 2 23 259 280 258 280 0.97

6 7 1.5e-06 4.4e-05 24.5 3.1 1 23 286 308 286 308 0.98

7 7 2.1e-06 6e-05 24.1 0.4 1 23 314 337 314 337 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.6	2.8e+02	3.1	5.8	1	23	147	169	147	169	0.96
2	7	0.00077	0.022	16.0	0.1	2	23	176	196	175	196	0.96
3	7	0.00079	0.023	16.0	0.1	3	23	203	223	202	223	0.97
4	7	8.2e-06	0.00024	22.2	2.0	1	23	228	250	228	250	0.99
5	7	3.1e-05	0.00088	20.4	0.8	2	23	259	280	258	280	0.97
6	7	1.5e-06	4.4e-05	24.5	3.1	1	23	286	308	286	308	0.98
7	7	2.1e-06	6e-05	24.1	0.4	1	23	314	337	314	337	0.97

Sequence Information

Coding Sequence: ATGGAATTTACGTGTCGTACGTGTTTAAAAATTACCTCCAAACTGACCGACATTTTTGCGGACCATTTACCGCAAAAAATTGAAACCATTTCGTCTCTCCAAATCACAAAAGACGACAGGTATCCGAGTAAAATATGCGAACAGTGCGTACGGAACGTGCACCTCCTCCACGATTTCCGCAGCATCATTTTAAGAAGCCACACAATTTTGCAGGAACGTTACATCAAAGATGAAGTCGTTGAAGCTGAATCCGTAACCGTAGAAGTTAGCATCAATGACGAGGAGGAAGAAAAGGACTGTAAAATTTCTGAAGTTAAAGTTGAAAGCGTTACTCTCGACGATTTGTTGCTTGACGACGTTGAAATTGTCAACGAAGCCGACGACTGCGAAGATATAGAGAACAAAGTGACCGGTATGAACAACAACAAAGATGTCGTCTACGCTTGTGAGCACTGTGATTTTACAACCTCGGTCCACGAAGATTGGCGGTGTCACAAGCGGATGCACAAGGAGGTTCTAAAATCCGTGTGCAACATTTGCGGGAAGTCAATTCGCATTGACAATTTAAAAAAGCACATCTCGATTCATACTGAGACACCGGTGGCGTGCAAAATTTGCGGGAAAGTGGTGAAAAATATGGAATCGTTAAGGGGACACTTGTTGATTCACAAGGGTAACAGCTACCAGTGTACTGTGTGTGGAAAGGTTTATAAACATAGAGGGGGCTACAACGTCCATCTGAAGCGCCACGCACTTGGAGATGTTAAAACGGTGGAATGTTCAGTGTGTGGAAAATTTTTTTTTGAAAGGCAAACGCTGGTCAAACACATGAGGAGTCACACGGGGGAGCGACCCTATCCTTGCCAGTACTGCAAGAAAGGTTTTTCGAGTAGTCATGCCTTGAAAACGCACATAAGGAGGCACACGAATGAGAAACCGTACGCCTGCGAGTACTGTGACAGGGCGTTCCCTCAGAGGGTGTCCCTTAGGACGCACATTAGGTCGAGACATTCGGATAAAATCTTGGAACAGAACAGTTCTTAA
Protein Sequence: MEFTCRTCLKITSKLTDIFADHLPQKIETISSLQITKDDRYPSKICEQCVRNVHLLHDFRSIILRSHTILQERYIKDEVVEAESVTVEVSINDEEEEKDCKISEVKVESVTLDDLLLDDVEIVNEADDCEDIENKVTGMNNNKDVVYACEHCDFTTSVHEDWRCHKRMHKEVLKSVCNICGKSIRIDNLKKHISIHTETPVACKICGKVVKNMESLRGHLLIHKGNSYQCTVCGKVYKHRGGYNVHLKRHALGDVKTVECSVCGKFFFERQTLVKHMRSHTGERPYPCQYCKKGFSSSHALKTHIRRHTNEKPYACEYCDRAFPQRVSLRTHIRSRHSDKILEQNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294341; iTF_00928075; iTF_00269110; iTF_00271844; iTF_00273081; iTF_00270420;
90% Identity: iTF_01294341;
80% Identity: -