Rful000677.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- topi
- Assembly
- GCA_905340355.1
- Location
- HG996560.1:9956206-9958752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.053 1.5 10.2 2.9 2 19 107 124 106 126 0.95 2 13 0.00064 0.019 16.3 1.7 1 23 150 172 150 172 0.94 3 13 0.014 0.41 12.0 0.4 1 20 178 197 178 199 0.93 4 13 0.078 2.3 9.7 2.3 2 23 261 282 260 282 0.96 5 13 6.6 1.9e+02 3.7 0.2 1 21 288 308 288 309 0.83 6 13 0.026 0.75 11.2 1.6 2 22 325 345 324 348 0.88 7 13 0.018 0.51 11.7 0.3 1 23 426 449 426 449 0.98 8 13 0.16 4.7 8.7 0.3 3 23 455 475 453 475 0.96 9 13 7e-07 2e-05 25.6 1.9 1 23 481 503 481 503 0.98 10 13 0.042 1.2 10.6 1.7 1 23 509 534 509 534 0.96 11 13 1.5 44 5.6 1.3 1 23 540 562 540 562 0.74 12 13 7.6e-05 0.0022 19.2 0.9 1 23 568 590 568 590 0.98 13 13 0.0011 0.033 15.5 1.6 1 23 596 619 596 619 0.97
Sequence Information
- Coding Sequence
- ATGGATAATTTCAATGTTATCGTCACGGTACACAAAATATCCGAGGATGGTGATGTTAGCGCTATACGAGTTGAAGAAAATTATCTTACTGGTTTAGTGACCGTAACTAAACTTCCCTACGAAAATGGGACCGATATTTCAGGCCGTCGTTGGGATTATGTGGAAAAGTCTAATAAACTGAAATTGGTTTTCCCTCGTGTGGATCTCGAAGAAGTAGCAACTGTCACTCTAGTCGAGATTAGAGATACGGAAGAAGTAAACTCAGTAGATTATGCAGTCCAACCCAAAAGCAAAATTCCGAGTGTGCCATCAATGATTAGGTGTCAAAATTGTGACACCAATTTTGCTACAAAATATAAATATCAACGCCATAATTGTGATTTTATTGGAGACAAAACGGTGATGACAGTGGTTCCAGATGTCAAACGTTCAGAAAAGAGTACAAAGTTTTGCTGCGGTATTTGTGATAAGAAGTTTGTGAATCAACGTAATTTAGACATACATGAGTCTAATCATACTGAGAGAGAAAAACATGTCTGTGAGCATTGTAACAACAAATTTGTAAGTGCAAGTCGCCTGATTATACATCAGGCAAGTAATTGTAAAAAAACTGCCGCTCTTTCAAAATTCCATCATACCGATGTAACTGCTTGGAAATGCATTACATGTGGTCAAGTATTTGGTACATCTACTTCGGCTGATATGCATGCAGAAATGTGTACTGAAGTCCCAGGTGGAAATGTGGTTCCACATGTTATTGCATCTTCAGAAGTGATATTGCAATGCAGATATTGTAATACTACATACTTGGACAGTAAATCACTTTTAAAGCACCAATATAAGCACACCACTCAGGTGAATTTTGAATGCGTTTCATGCAAAGAAACTTTTAGTTTGTATACAACCGCAGTAAATCATTGGATGACCGTGTGTTCCGATGAAACTAACTCGTTTTCTCTTAAAAAAATGACCTACTGTGAGGTTTGTGAAGAAACATTCACATCTCACGAAGAATTGTATACACATAAAATAAAAAGAAGGCATTACTCTCGTAAAATGCATGTCGTACTCAACGAAGACACAGATATGTTTTTGGATACAAGAAACGAAAAAGAACATACTTGGAAAGAAAAATTTGCAGAAGTATTCAACCAAAACTTTATGGCCACAGAAACTAAAGCAACTCCAAAAAGTTTGAACCAAGTGAACGGTGGACTGGAAGAAAAGAAAACATACCCTACACAAAAATTGCAAGAACAGCTTTCGCATTTCGTTTATCAGTGTGAACGTTGCGACGGTGTGTTTAATACTATTTTGGATTTAGAATTACACCGCAAGAAGGATCACACTGATAATTGTTTATGCGAAATGTGTGGACAGGTTCTCCAAAATGTAAAAGCATTGGAAATTCACAGGAGAGGCCATAAAAATTTGAAACCATATCCTTGCGATTTCTGTGATAAAGCTTTTTCCCAATCGTCACACTTGCTCCAGCATATAAGATACCATAAAGGGATTAAACCGTTTATTTGCCATTATGAAGGATGTGATGCTCGCTTTACTATTGGATCTGATCTAAGGGATCACATTTGTACGCGGCATACTCGAGAGAGAAAATTTAAATGTGCTACTTGCAACAAATCCTTTCTTACTGGGACTGTTTACTATCAACATCGTCTCATGCATACCAGTGATCGAAGATACTCCTGTGAGATTTGCAAAAAGAAATTTTTCCGAGCAAATGGTCTACGTACCCATCTTCTAATTCACAACAAGGAAAAACCATATCCTTGTGAATTTTGTGAAAGAAATTTTCGTCGAAATGGAGATCGAAAGAAGCATCTACAGTCCCAACATCCGAATCAGTTATAA
- Protein Sequence
- MDNFNVIVTVHKISEDGDVSAIRVEENYLTGLVTVTKLPYENGTDISGRRWDYVEKSNKLKLVFPRVDLEEVATVTLVEIRDTEEVNSVDYAVQPKSKIPSVPSMIRCQNCDTNFATKYKYQRHNCDFIGDKTVMTVVPDVKRSEKSTKFCCGICDKKFVNQRNLDIHESNHTEREKHVCEHCNNKFVSASRLIIHQASNCKKTAALSKFHHTDVTAWKCITCGQVFGTSTSADMHAEMCTEVPGGNVVPHVIASSEVILQCRYCNTTYLDSKSLLKHQYKHTTQVNFECVSCKETFSLYTTAVNHWMTVCSDETNSFSLKKMTYCEVCEETFTSHEELYTHKIKRRHYSRKMHVVLNEDTDMFLDTRNEKEHTWKEKFAEVFNQNFMATETKATPKSLNQVNGGLEEKKTYPTQKLQEQLSHFVYQCERCDGVFNTILDLELHRKKDHTDNCLCEMCGQVLQNVKALEIHRRGHKNLKPYPCDFCDKAFSQSSHLLQHIRYHKGIKPFICHYEGCDARFTIGSDLRDHICTRHTRERKFKCATCNKSFLTGTVYYQHRLMHTSDRRYSCEICKKKFFRANGLRTHLLIHNKEKPYPCEFCERNFRRNGDRKKHLQSQHPNQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -